Regularized machine learning in the genetic prediction of complex traits

S Okser, T Pahikkala, A Airola, T Salakoski… - PLoS …, 2014 - journals.plos.org
Compared to univariate analysis of genome-wide association (GWA) studies, machine
learning–based models have been shown to provide improved means of learning such …

The prediction of radiotherapy toxicity using single nucleotide polymorphism− based models: a step toward prevention

SL Kerns, S Kundu, JH Oh, SK Singhal… - Seminars in radiation …, 2015 - Elsevier
Radiotherapy is a mainstay of cancer treatment, used in either a curative or palliative
manner to treat approximately 50% of patients with cancer. Normal tissue toxicity limits the …

Integrative random forest for gene regulatory network inference

F Petralia, P Wang, J Yang, Z Tu - Bioinformatics, 2015 - academic.oup.com
Motivation: Gene regulatory network (GRN) inference based on genomic data is one of the
most actively pursued computational biological problems. Because different types of …

Computational methods using genome-wide association studies to predict radiotherapy complications and to identify correlative molecular processes

JH Oh, S Kerns, H Ostrer, SN Powell, B Rosenstein… - Scientific reports, 2017 - nature.com
The biological cause of clinically observed variability of normal tissue damage following
radiotherapy is poorly understood. We hypothesized that machine/statistical learning …

Genetic architecture associated with familial short stature

YJ Lin, CF Cheng, CH Wang, WM Liang… - The Journal of …, 2020 - academic.oup.com
Context Human height is an inheritable, polygenic trait under complex and multilocus
genetic regulation. Familial short stature (FSS; also called genetic short stature) is the most …

Toward a molecular approach to chronotype assessment

A Biscontin, L Zarantonello, A Russo… - Journal of biological …, 2022 - journals.sagepub.com
The aim of the present study was to develop a Polygenic Score–based model for molecular
chronotype assessment. Questionnaire-based phenotypical chronotype assessment was …

SNPs-based hypertension disease detection via machine learning techniques

R Alzubi, N Ramzan, H Alzoubi… - … on Automation and …, 2018 - ieeexplore.ieee.org
Machine learning and data mining techniques have recently gained more popularity in the
field of Medical diagnosis, especially for the analysis of the human genome. One of the most …

Genome-enabled predictions for binomial traits in sugar beet populations

F Biscarini, P Stevanato, C Broccanello, A Stella… - BMC genetics, 2014 - Springer
Background Genomic information can be used to predict not only continuous but also
categorical (eg binomial) traits. Several traits of interest in human medicine and agriculture …