Evolution of sucrose metabolism: the dichotomy of invertases and beyond

H Wan, L Wu, Y Yang, G Zhou, YL Ruan - Trends in plant science, 2018 - cell.com
In higher plants, invertases hydrolyze sucrose (Suc), the major end product of
photosynthesis, into glucose (Glc) and fructose (Fru), which are used as nutrients, energy …

Hearing silence: non-neutral evolution at synonymous sites in mammals

JV Chamary, JL Parmley, LD Hurst - Nature Reviews Genetics, 2006 - nature.com
Although the assumption of the neutral theory of molecular evolution—that some classes of
mutation have too small an effect on fitness to be affected by natural selection—seems …

[HTML][HTML] Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution

DA Drummond, CO Wilke - Cell, 2008 - cell.com
Strikingly consistent correlations between rates of coding-sequence evolution and gene
expression levels are apparent across taxa, but the biological causes behind the selective …

An integrated view of protein evolution

C Pál, B Papp, MJ Lercher - Nature reviews genetics, 2006 - nature.com
Why do proteins evolve at different rates? Advances in systems biology and genomics have
facilitated a move from studying individual proteins to characterizing global cellular factors …

Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution

RM Davidson, M Gowda, G Moghe, H Lin… - The Plant …, 2012 - Wiley Online Library
The Poaceae family, also known as the grasses, includes agronomically important cereal
crops such as rice, maize, sorghum, and wheat. Previous comparative studies have shown …

A single determinant dominates the rate of yeast protein evolution

DA Drummond, A Raval, CO Wilke - Molecular biology and …, 2006 - academic.oup.com
A gene's rate of sequence evolution is among the most fundamental evolutionary quantities
in common use, but what determines evolutionary rates has remained unclear. Here, we …

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

M Piques, WX Schulze, M Höhne, B Usadel… - Molecular systems …, 2009 - embopress.org
Plants are exposed to continual changes in the environment. The daily alternation between
light and darkness results in massive recurring changes in the carbon budget, and leads to …

Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly

S Takuno, BS Gaut - Molecular biology and evolution, 2012 - academic.oup.com
DNA methylation of coding regions, known as gene body methylation, is conserved across
eukaryotic lineages. The function of body methylation is not known, but it may either prevent …

Analysis of codon usage bias of mitochondrial genome in Bombyx moriand its relation to evolution

L Wei, J He, X Jia, Q Qi, Z Liang, H Zheng, Y **… - BMC evolutionary …, 2014 - Springer
Background Synonymous codon usage bias (SCUB) is an inevitable phenomenon in
organismic taxa, generally referring to differences in the occurrence frequency of codons …

Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa

P Monnahan, F Kolář, P Baduel, C Sailer… - Nature ecology & …, 2019 - nature.com
Ploidy-variable species allow direct inference of the effects of chromosome copy number on
fundamental evolutionary processes. While an abundance of theoretical work suggests …