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Evolution of sucrose metabolism: the dichotomy of invertases and beyond
In higher plants, invertases hydrolyze sucrose (Suc), the major end product of
photosynthesis, into glucose (Glc) and fructose (Fru), which are used as nutrients, energy …
photosynthesis, into glucose (Glc) and fructose (Fru), which are used as nutrients, energy …
Hearing silence: non-neutral evolution at synonymous sites in mammals
Although the assumption of the neutral theory of molecular evolution—that some classes of
mutation have too small an effect on fitness to be affected by natural selection—seems …
mutation have too small an effect on fitness to be affected by natural selection—seems …
[HTML][HTML] Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
Strikingly consistent correlations between rates of coding-sequence evolution and gene
expression levels are apparent across taxa, but the biological causes behind the selective …
expression levels are apparent across taxa, but the biological causes behind the selective …
An integrated view of protein evolution
Why do proteins evolve at different rates? Advances in systems biology and genomics have
facilitated a move from studying individual proteins to characterizing global cellular factors …
facilitated a move from studying individual proteins to characterizing global cellular factors …
Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution
RM Davidson, M Gowda, G Moghe, H Lin… - The Plant …, 2012 - Wiley Online Library
The Poaceae family, also known as the grasses, includes agronomically important cereal
crops such as rice, maize, sorghum, and wheat. Previous comparative studies have shown …
crops such as rice, maize, sorghum, and wheat. Previous comparative studies have shown …
A single determinant dominates the rate of yeast protein evolution
A gene's rate of sequence evolution is among the most fundamental evolutionary quantities
in common use, but what determines evolutionary rates has remained unclear. Here, we …
in common use, but what determines evolutionary rates has remained unclear. Here, we …
Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis
Plants are exposed to continual changes in the environment. The daily alternation between
light and darkness results in massive recurring changes in the carbon budget, and leads to …
light and darkness results in massive recurring changes in the carbon budget, and leads to …
Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
DNA methylation of coding regions, known as gene body methylation, is conserved across
eukaryotic lineages. The function of body methylation is not known, but it may either prevent …
eukaryotic lineages. The function of body methylation is not known, but it may either prevent …
Analysis of codon usage bias of mitochondrial genome in Bombyx moriand its relation to evolution
L Wei, J He, X Jia, Q Qi, Z Liang, H Zheng, Y **… - BMC evolutionary …, 2014 - Springer
Background Synonymous codon usage bias (SCUB) is an inevitable phenomenon in
organismic taxa, generally referring to differences in the occurrence frequency of codons …
organismic taxa, generally referring to differences in the occurrence frequency of codons …
Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa
Ploidy-variable species allow direct inference of the effects of chromosome copy number on
fundamental evolutionary processes. While an abundance of theoretical work suggests …
fundamental evolutionary processes. While an abundance of theoretical work suggests …