Analysing microbial community composition through amplicon sequencing: from sampling to hypothesis testing

LW Hugerth, AF Andersson - Frontiers in microbiology, 2017 - frontiersin.org
Microbial ecology as a scientific field is fundamentally driven by technological advance. The
past decade's revolution in DNA sequencing cost and throughput has made it possible for …

Emerging diseases of Cannabis sativa and sustainable management

ZK Punja - Pest management science, 2021 - Wiley Online Library
Cultivation of cannabis plants (Cannabis sativa L., marijuana) has taken place worldwide for
centuries. In Canada, legalization of cannabis in October 2018 for the medicinal and …

Metallic micronutrients are associated with the structure and function of the soil microbiome

Z Dai, X Guo, J Lin, X Wang, D He, R Zeng… - Nature …, 2023 - nature.com
The relationship between metallic micronutrients and soil microorganisms, and thereby soil
functioning, has been little explored. Here, we investigate the relationship between metallic …

Microplastics accumulate fungal pathogens in terrestrial ecosystems

G Gkoutselis, S Rohrbach, J Harjes, M Obst… - Scientific Reports, 2021 - nature.com
Microplastic (MP) is a pervasive pollutant in nature that is colonised by diverse groups of
microbes, including potentially pathogenic species. Fungi have been largely neglected in …

Organic substitutions improve soil quality and maize yield through increasing soil microbial diversity

H Liu, X Du, Y Li, X Han, B Li, X Zhang, Q Li… - Journal of Cleaner …, 2022 - Elsevier
Organic substitution is beneficial to sustainable agricultural development. In order to
determine the proper fertilization strategy, it is necessary to evaluate the effects of partial …

Intestinal fungi are causally implicated in microbiome assembly and immune development in mice

E van Tilburg Bernardes, VK Pettersen… - Nature …, 2020 - nature.com
The gut microbiome consists of a multi-kingdom microbial community. Whilst the role of
bacteria as causal contributors governing host physiological development is well …

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

B Beckers, M Op De Beeck, N Weyens, W Boerjan… - Microbiome, 2017 - Springer
Background The plant microbiome represents one of the key determinants of plant health
and productivity by providing a plethora of functional capacities such as access to low …

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

T Větrovský, D Morais, P Kohout, C Lepinay, C Algora… - Scientific Data, 2020 - nature.com
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …

[PDF][PDF] Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

L Tedersoo, S Anslan, M Bahram, S Põlme, T Riit… - …, 2015 - mycokeys.pensoft.net
Rapid development of high-throughput (HTS) molecular identification methods has
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …

Impacts of inorganic and organic fertilization treatments on bacterial and fungal communities in a paddy soil

J Wang, Y Song, T Ma, W Raza, J Li, JG Howland… - Applied Soil …, 2017 - Elsevier
Soil microbes play an integral role in agricultural production, and there is limited
understating of the complex responses of microbial diversity to organic and conventional …