Strategies to overcome the challenges of low or no expression of heterologous proteins in Escherichia coli

R Jiang, S Yuan, Y Zhou, Y Wei, F Li, M Wang… - Biotechnology …, 2024 - Elsevier
Protein expression is a critical process in diverse biological systems. For Escherichia coli, a
widely employed microbial host in industrial catalysis and healthcare, researchers often face …

Metabolic responses to recombinant bioprocesses in Escherichia coli

S Carneiro, EC Ferreira, I Rocha - Journal of biotechnology, 2013 - Elsevier
Escherichia coli has been widely used for the production of recombinant proteins. However,
the unbalances between host metabolism and recombinant biosynthesis continue to hamper …

Codon optimization with deep learning to enhance protein expression

H Fu, Y Liang, X Zhong, ZL Pan, L Huang, HL Zhang… - Scientific reports, 2020 - nature.com
Heterologous expression is the main approach for recombinant protein production ingenetic
synthesis, for which codon optimization is necessary. The existing optimization methods are …

Efficient mAb production in CHO cells with optimized signal peptide, codon, and UTR

M You, Y Yang, C Zhong, F Chen, X Wang, T Jia… - Applied microbiology …, 2018 - Springer
Antibody drugs have been used to treat a number of diseases successfully. Producing
antibodies with high yield and quality is necessary for clinical applications of antibodies. For …

A detailed comparative analysis on the overall codon usage pattern in herpesviruses

S RoyChoudhury, D Mukherjee - Virus Research, 2010 - Elsevier
Herpesviruses infect a wide range of organisms including humans. Some of these viruses
are potential gene transfer vectors for gene therapy. However no study has been reported …

Evolution of synonymous codon usage bias in west African and central African strains of monkeypox virus

S Karumathil, NT Raveendran… - Evolutionary …, 2018 - journals.sagepub.com
The evolution of bias in synonymous codon usage in chosen monkeypox viral genomes and
the factors influencing its diversification have not been reported so far. In this study, various …

“CodonWizard”–An intuitive software tool with graphical user interface for customizable codon optimization in protein expression efforts

P Rehbein, J Berz, P Kreisel, H Schwalbe - Protein Expression and …, 2019 - Elsevier
Optimization of coding sequences to maximize protein expression yield is often outsourced
to external service providers during commercial gene synthesis and thus unfortunately …

Bacterial expression of Crimean-Congo hemorrhagic fever virus nucleoprotein and its evaluation as a diagnostic reagent in an indirect ELISA

RR Samudzi, PA Leman, JT Paweska… - Journal of virological …, 2012 - Elsevier
Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne viral zoonosis distributed
widely in Africa, Asia, Russia and the Balkans. The emergence and re-emergence of …

Ligand and structure-based approaches for the identification of peptide deformylase inhibitors as antibacterial drugs

J Gao, L Liang, Y Zhu, S Qiu, T Wang… - International Journal of …, 2016 - mdpi.com
Peptide deformylase (PDF) is a metalloprotease catalyzing the removal of a formyl group
from newly synthesized proteins, which makes it an important antibacterial drug target …

gtAI: an improved species-specific tRNA adaptation index using the genetic algorithm

AM Anwar, SM Khodary, EA Ahmed… - Frontiers in Molecular …, 2023 - frontiersin.org
The tRNA adaptation index (tAI) is a translation efficiency metric that considers weighted
values (S ij values) for codon–tRNA wobble interaction efficiencies. The initial …