A Comprehensive Review of Computation‐Based Metal‐Binding Prediction Approaches at the Residue Level
N Ye, F Zhou, X Liang, H Chai, J Fan… - BioMed research …, 2022 - Wiley Online Library
Clear evidence has shown that metal ions strongly connect and delicately tune the dynamic
homeostasis in living bodies. They have been proved to be associated with protein structure …
homeostasis in living bodies. They have been proved to be associated with protein structure …
Aurora kinase A regulates Survivin stability through targeting FBXL7 in gastric cancer drug resistance and prognosis
Aurora kinase A (AURKA) has been implicated in the regulation of cell cycle progression,
mitosis and a key number of oncogenic signaling pathways in various malignancies …
mitosis and a key number of oncogenic signaling pathways in various malignancies …
Attention mechanism enhanced LSTM with residual architecture and its application for protein-protein interaction residue pairs prediction
J Liu, X Gong - BMC bioinformatics, 2019 - Springer
Background Recurrent neural network (RNN) is a good way to process sequential data, but
the capability of RNN to compute long sequence data is inefficient. As a variant of RNN, long …
the capability of RNN to compute long sequence data is inefficient. As a variant of RNN, long …
Computational network inference for bacterial interactomics
K James, J Muñoz-Muñoz - Msystems, 2022 - Am Soc Microbiol
Since the large-scale experimental characterization of protein–protein interactions (PPIs) is
not possible for all species, several computational PPI prediction methods have been …
not possible for all species, several computational PPI prediction methods have been …
Gossypium hirsutum calmodulin-like protein (CML 11) interaction with geminivirus encoded protein using bioinformatics and molecular techniques
Plant viruses are the most abundant destructive agents that exist in every ecosystem,
causing severe diseases in multiple crops worldwide. Currently, a major gap is present in …
causing severe diseases in multiple crops worldwide. Currently, a major gap is present in …
deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host–pathogen protein–protein interactions
Host-pathogen protein interactions (HPPIs) play vital roles in many biological processes and
are directly involved in infectious diseases. With the outbreak of more frequent pandemics in …
are directly involved in infectious diseases. With the outbreak of more frequent pandemics in …
Protein-protein interaction interface residue pair prediction based on deep learning architecture
Z Zhao, X Gong - IEEE/ACM transactions on computational …, 2017 - ieeexplore.ieee.org
Motivation: Proteins usually fulfill their biological functions by interacting with other proteins.
Although some methods have been developed to predict the binding sites of a monomer …
Although some methods have been developed to predict the binding sites of a monomer …
In silico Prediction and Validations of Domains Involved in Gossypium hirsutum SnRK1 Protein Interaction With Cotton Leaf Curl Multan Betasatellite Encoded βC1
Cotton leaf curl disease (CLCuD) caused by viruses of genus Begomovirus is a major
constraint to cotton (Gossypium hirsutum) production in many cotton-growing regions of the …
constraint to cotton (Gossypium hirsutum) production in many cotton-growing regions of the …
Bag-1 stimulates Bad phosphorylation through activation of Akt and Raf kinases to mediate cell survival in breast cancer
Abstract Background Bag-1 (Bcl-2-associated athanogene) is a multifunctional anti-
apoptotic protein frequently overexpressed in cancer. Bag-1 interacts with a variety of …
apoptotic protein frequently overexpressed in cancer. Bag-1 interacts with a variety of …
PPI-Miner: A Structure and Sequence Motif Co-Driven Protein–Protein Interaction Mining and Modeling Computational Method
Protein–protein interactions (PPIs) play important roles in biological processes of life, and
predicting PPIs becomes a critical scientific issue of concern. Most PPIs occur through small …
predicting PPIs becomes a critical scientific issue of concern. Most PPIs occur through small …