Overcoming cancer therapeutic bottleneck by drug repurposing

Z Zhang, L Zhou, N ** workflows to link chemicals with bioactivities
I Shah, J Bundy, B Chambers, LJ Everett… - Chemical research in …, 2022‏ - ACS Publications
Screening new compounds for potential bioactivities against cellular targets is vital for drug
discovery and chemical safety. Transcriptomics offers an efficient approach for assessing …

Multiplexed single-cell transcriptional response profiling to define cancer vulnerabilities and therapeutic mechanism of action

JM McFarland, BR Paolella, A Warren… - Nature …, 2020‏ - nature.com
Assays to study cancer cell responses to pharmacologic or genetic perturbations are
typically restricted to using simple phenotypic readouts such as proliferation rate. Information …

Integrating cell morphology with gene expression and chemical structure to aid mitochondrial toxicity detection

S Seal, J Carreras-Puigvert, MA Trapotsi… - Communications …, 2022‏ - nature.com
Mitochondrial toxicity is an important safety endpoint in drug discovery. Models based solely
on chemical structure for predicting mitochondrial toxicity are currently limited in accuracy …

Predicting cell health phenotypes using image-based morphology profiling

GP Way, M Kost-Alimova, T Shibue… - Molecular biology of …, 2021‏ - molbiolcell.org
Genetic and chemical perturbations impact diverse cellular phenotypes, including multiple
indicators of cell health. These readouts reveal toxicity and antitumorigenic effects relevant …

[HTML][HTML] Electrospun fibres of chitosan/PVP for the effective chemotherapeutic drug delivery of 5-fluorouracil

JJ Grant, SC Pillai, TS Perova, S Hehir, SJ Hinder… - Chemosensors, 2021‏ - mdpi.com
Electrospun nanofibrous mats consisting of chitosan (CS) and polyvinylpyrrolidone (PVP)
were constructed. Tuning of solution and process parameters was performed and resulted in …

From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability

S Seal, J Carreras-Puigvert, S Singh… - Molecular Biology of …, 2024‏ - molbiolcell.org
Cell Painting assays generate morphological profiles that are versatile descriptors of
biological systems and have been used to predict in vitro and in vivo drug effects. However …

[HTML][HTML] A community challenge for a pancancer drug mechanism of action inference from perturbational profile data

EF Douglass, RJ Allaway, B Szalai, W Wang, T Tian… - Cell Reports …, 2022‏ - cell.com
Summary The Columbia Cancer Target Discovery and Development (CTD2) Center is
develo** PANACEA, a resource comprising dose-responses and RNA sequencing (RNA …

Assessment of modelling strategies for drug response prediction in cell lines and xenografts

R Kurilov, B Haibe-Kains, B Brors - Scientific reports, 2020‏ - nature.com
Data from several large high-throughput drug response screens have become available to
the scientific community recently. Although many efforts have been made to use this …