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Multi-omic and multi-view clustering algorithms: review and cancer benchmark
N Rappoport, R Shamir - Nucleic acids research, 2018 - academic.oup.com
Recent high throughput experimental methods have been used to collect large biomedical
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …
Constructing neural network based models for simulating dynamical systems
Dynamical systems see widespread use in natural sciences like physics, biology, and
chemistry, as well as engineering disciplines such as circuit analysis, computational fluid …
chemistry, as well as engineering disciplines such as circuit analysis, computational fluid …
[책][B] Synthetic data for deep learning
SI Nikolenko - 2021 - Springer
You are holding in your hands… oh, come on, who holds books like this in their hands
anymore? Anyway, you are reading this, and it means that I have managed to release one of …
anymore? Anyway, you are reading this, and it means that I have managed to release one of …
Molecular sets (MOSES): a benchmarking platform for molecular generation models
Generative models are becoming a tool of choice for exploring the molecular space. These
models learn on a large training dataset and produce novel molecular structures with similar …
models learn on a large training dataset and produce novel molecular structures with similar …
Transforming the language of life: transformer neural networks for protein prediction tasks
The scientific community is rapidly generating protein sequence information, but only a
fraction of these proteins can be experimentally characterized. While promising deep …
fraction of these proteins can be experimentally characterized. While promising deep …
Concept activation regions: A generalized framework for concept-based explanations
Abstract Concept-based explanations permit to understand the predictions of a deep neural
network (DNN) through the lens of concepts specified by users. Existing methods assume …
network (DNN) through the lens of concepts specified by users. Existing methods assume …
Explaining latent representations with a corpus of examples
Modern machine learning models are complicated. Most of them rely on convoluted latent
representations of their input to issue a prediction. To achieve greater transparency than a …
representations of their input to issue a prediction. To achieve greater transparency than a …
Classification of human white blood cells using machine learning for stain‐free imaging flow cytometry
M Lippeveld, C Knill, E Ladlow, A Fuller… - Cytometry Part …, 2020 - Wiley Online Library
Imaging flow cytometry (IFC) produces up to 12 spectrally distinct, information‐rich images of
single cells at a throughput of 5,000 cells per second. Yet often, cell populations are still …
single cells at a throughput of 5,000 cells per second. Yet often, cell populations are still …
Angiodysplasia detection and localization using deep convolutional neural networks
Accurate detection and localization for angiodysplasia lesions is an important problem in
early stage diagnostics of gastrointestinal bleeding and anemia. Gold standard for …
early stage diagnostics of gastrointestinal bleeding and anemia. Gold standard for …
Deep in the bowel: highly interpretable neural encoder-decoder networks predict gut metabolites from gut microbiome
Background Technological advances in next-generation sequencing (NGS) and
chromatographic assays [eg, liquid chromatography mass spectrometry (LC-MS)] have …
chromatographic assays [eg, liquid chromatography mass spectrometry (LC-MS)] have …