Industrial biotechnology of Pseudomonas putida: advances and prospects

A Weimer, M Kohlstedt, DC Volke, PI Nikel… - Applied microbiology …, 2020 - Springer
Pseudomonas putida is a Gram-negative, rod-shaped bacterium that can be encountered in
diverse ecological habitats. This ubiquity is traced to its remarkably versatile metabolism …

Synthetic biology of extremophiles: a new wave of biomanufacturing

JW Ye, YN Lin, XQ Yi, ZX Yu, X Liu, GQ Chen - Trends in Biotechnology, 2023 - cell.com
Microbial biomanufacturing, powered by the advances of synthetic biology, has attracted
growing interest for the production of diverse products. In contrast to conventional microbes …

Cofunctioning of bacterial exometabolites drives root microbiota establishment

F Getzke, MA Hassani, M Crüsemann, M Malisic… - Proceedings of the …, 2023 - pnas.org
Soil-dwelling microbes are the principal inoculum for the root microbiota, but our
understanding of microbe–microbe interactions in microbiota establishment remains …

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

E Martínez-García, S Fraile, E Algar… - Nucleic Acids …, 2023 - academic.oup.com
Abstract The SEVA platform (https://seva-plasmids. com) was launched one decade ago,
both as a database (DB) and as a physical repository of plasmid vectors for genetic analysis …

A versatile active learning workflow for optimization of genetic and metabolic networks

A Pandi, C Diehl, A Yazdizadeh Kharrazi… - Nature …, 2022 - nature.com
Optimization of biological networks is often limited by wet lab labor and cost, and the lack of
convenient computational tools. Here, we describe METIS, a versatile active machine …

Metabolic engineering of Cupriavidus necator H16 for sustainable biofuels from CO2

J Panich, B Fong, SW Singer - Trends in Biotechnology, 2021 - cell.com
Decelerating global warming is one of the predominant challenges of our time and will
require conversion of CO 2 to usable products and commodity chemicals. Of particular …

Type III secretion system effectors form robust and flexible intracellular virulence networks

D Ruano-Gallego, J Sanchez-Garrido, Z Kozik… - Science, 2021 - science.org
Infections with many Gram-negative pathogens, including Escherichia coli, Salmonella,
Shigella, and Yersinia, rely on type III secretion system (T3SS) effectors. We hypothesized …

[HTML][HTML] A navigation guide of synthetic biology tools for Pseudomonas putida

M Martin-Pascual, C Batianis, L Bruinsma… - Biotechnology …, 2021 - Elsevier
Pseudomonas putida is a microbial chassis of huge potential for industrial and
environmental biotechnology, owing to its remarkable metabolic versatility and ability to …

Towards robust Pseudomonas cell factories to harbour novel biosynthetic pathways

NL Bitzenhofer, L Kruse, S Thies… - Essays in …, 2021 - portlandpress.com
Biotechnological production in bacteria enables access to numerous valuable chemical
compounds. Nowadays, advanced molecular genetic toolsets, enzyme engineering as well …

Halomonas as a chassis

JW Ye, GQ Chen - Essays in Biochemistry, 2021 - portlandpress.com
With the rapid development of systems and synthetic biology, the non-model bacteria,
Halomonas spp., have been developed recently to become a cost-competitive platform for …