Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
B Koskella, MA Brockhurst - FEMS microbiology reviews, 2014 - academic.oup.com
Bacteria–phage coevolution, the reciprocal evolution between bacterial hosts and the
phages that infect them, is an important driver of ecological and evolutionary processes in …
phages that infect them, is an important driver of ecological and evolutionary processes in …
A comprehensive survey of the approaches for pathway analysis using multi-omics data integration
Pathway analysis has been widely used to detect pathways and functions associated with
complex disease phenotypes. The proliferation of this approach is due to better …
complex disease phenotypes. The proliferation of this approach is due to better …
EcoCyc: fusing model organism databases with systems biology
IM Keseler, A Mackie, M Peralta-Gil… - Nucleic acids …, 2013 - academic.oup.com
Abstract EcoCyc (http://EcoCyc. org) is a model organism database built on the genome
sequence of Escherichia coli K-12 MG1655. Expert manual curation of the functions of …
sequence of Escherichia coli K-12 MG1655. Expert manual curation of the functions of …
Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins
U Mamat, K Wilke, D Bramhill, AB Schromm… - Microbial cell …, 2015 - Springer
Background Lipopolysaccharide (LPS), also referred to as endotoxin, is the major
constituent of the outer leaflet of the outer membrane of virtually all Gram-negative bacteria …
constituent of the outer leaflet of the outer membrane of virtually all Gram-negative bacteria …
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
Genome-scale models (GEMs) of metabolism were constructed for 55 fully sequenced
Escherichia coli and Shigella strains. The GEMs enable a systems approach to …
Escherichia coli and Shigella strains. The GEMs enable a systems approach to …
The ecocyc database
EcoCyc is a bioinformatics database available at EcoCyc. org that describes the genome
and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the …
and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the …
CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production
Methods for simple and efficient regulation of metabolic pathway genes are essential for
maximizing product titers and conversion yields, and for minimizing the metabolic burden …
maximizing product titers and conversion yields, and for minimizing the metabolic burden …
Multi-omics quantification of species variation of Escherichia coli links molecular features with strain phenotypes
Escherichia coli strains are widely used in academic research and biotechnology. New
technologies for quantifying strain-specific differences and their underlying contributing …
technologies for quantifying strain-specific differences and their underlying contributing …
Monitoring and external control of pH in microfluidic droplets during microbial culturing
M Tovar, L Mahler, S Buchheim, M Roth… - Microbial cell …, 2020 - Springer
Background Cell-based experimentation in microfluidic droplets is becoming increasingly
popular among biotechnologists and microbiologists, since inherent characteristics of …
popular among biotechnologists and microbiologists, since inherent characteristics of …
The ecocyc database (2023)
EcoCyc is a bioinformatics database available online at EcoCyc. org that describes the
genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term …
genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term …