Improved bare bones particle swarm optimization for DNA sequence design

D Zhu, Z Huang, S Liao, C Zhou… - IEEE transactions on …, 2022 - ieeexplore.ieee.org
DNA computing has efficient computational power, but requires high requirements on the
DNA sequences used for coding, and reliable DNA sequences can effectively improve the …

Constraining DNA sequences with a triplet-bases unpaired

X Li, B Wang, H Lv, Q Yin, Q Zhang… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
DNA computing, the combination of computer science and molecular biology, is a
burgeoning research field that holds promise for many applications. The accuracy of DNA …

Improved particle swarm based on elastic collision for DNA coding optimization design

D Zhu, Z Huang, L **e, C Zhou - IEEE Access, 2022 - ieeexplore.ieee.org
In DNA computing, the design of DNA coding sequences is an important factor affecting the
reliability of DNA computing. In different DNA sequence designs, suitable constraints should …

DNA sequence optimization design of arithmetic optimization algorithm based on billiard hitting strategy

L **e, S Wang, D Zhu, G Hu, C Zhou - … Sciences: Computational Life …, 2023 - Springer
DNA computing is a very efficient way to calculate, but it relies on high-quality DNA
sequences, but it is difficult to design high-quality DNA sequences. The sequence it is …

An Optimization Generator of Synthetic DNA Fragments for the Rational Design of Environmental Tracers

J Guo, A Wang, R Liao, J Yan, X Li, Y Kang, Z Duan… - ACS …, 2025 - ACS Publications
Chemically synthesized DNA fragments are increasingly recognized as highly valuable
tracers for investigating environmental pollution due to their inherent high specificity …

A JAYA algorithm based on normal clouds for DNA sequence optimization

D Zhu, S Wang, Z Huang, C Zhou, L Zhang - Cluster Computing, 2024 - Springer
DNA computing is one of the more popular computational methods currently studied, but the
requirements for nucleic acid molecules in DNA sequences are high, and it is an important …

DNA sequences design under many objective evolutionary algorithm

H Guo, D Zhu, C Zhou, C Zou - Cluster Computing, 2024 - Springer
DNA computing is conducted through reactions between DNA molecules, the quality of DNA
sequences is directly influence on reactions. Following previous works, there are five metrics …

Stable DNA sequence over close-ending and pairing sequences constraint

X Li, Z Wei, B Wang, T Song - Frontiers in genetics, 2021 - frontiersin.org
DNA computing is a new method based on molecular biotechnology to solve complex
problems. The design of DNA sequences is a multi-objective optimization problem in DNA …

DNA Sequences Under Multiple Guanine–Cytosine (GC) Base Pairs Constraint

X Yang, C Zhou - IEEE Transactions on NanoBioscience, 2023 - ieeexplore.ieee.org
DNA computing is a new computing method that has high efficiency in solving large-scale
nonlinear and Non-deterministic Polynomial complete problems. The design of DNA …

Improved multi-strategy matrix particle swarm optimization for DNA sequence design

W Zhang, D Zhu, Z Huang, C Zhou - Electronics, 2023 - mdpi.com
The efficiency of DNA computation is closely related to the design of DNA coding
sequences. For the purpose of obtaining superior DNA coding sequences, it is necessary to …