Beyond the human genome project: the age of complete human genome sequences and pangenome references

DJ Taylor, JM Eizenga, Q Li, A Das… - Annual review of …, 2024 - annualreviews.org
The Human Genome Project was an enormous accomplishment, providing a foundation for
countless explorations into the genetics and genomics of the human species. Yet for many …

Global impact of proteoglycan science on human diseases

C **e, L Schaefer, RV Iozzo - Iscience, 2023 - cell.com
In this comprehensive review, we will dissect the impact of research on proteoglycans
focusing on recent developments involved in their synthesis, degradation, and interactions …

Sources of gene expression variation in a globally diverse human cohort

DJ Taylor, SB Chhetri, MG Tassia, A Biddanda, SM Yan… - Nature, 2024 - nature.com
Genetic variation that influences gene expression and splicing is a key source of phenotypic
diversity,,,–. Although invaluable, studies investigating these links in humans have been …

Coordination of alternative splicing and alternative polyadenylation revealed by targeted long read sequencing

Z Zhang, B Bae, WH Cuddleston, P Miura - Nature Communications, 2023 - nature.com
Nervous system development is associated with extensive regulation of alternative splicing
(AS) and alternative polyadenylation (APA). AS and APA have been extensively studied in …

Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing

CU Yuan, FX Quah, M Hemberg - Molecular Aspects of Medicine, 2024 - Elsevier
Single-cell technologies have transformed biomedical research over the last decade,
opening up new possibilities for understanding cellular heterogeneity, both at the genomic …

Long-read subcellular fractionation and sequencing reveals the translational fate of full-length mRNA isoforms during neuronal differentiation

AJ Ritter, JM Draper, C Vollmers… - Genome Research, 2024 - genome.cshlp.org
Alternative splicing (AS) alters the cis-regulatory landscape of mRNA isoforms, leading to
transcripts with distinct localization, stability, and translational efficiency. To rigorously …

Long-read sequencing transcriptome quantification with lr-kallisto

RK Loving, DK Sullivan, AS Booeshagi, F Reese… - …, 2025 - pmc.ncbi.nlm.nih.gov
RNA abundance quantification has become routine and affordable thanks to high-
throughput “short-read” technologies that provide accurate molecule counts at the gene …

mRNA initiation and termination are spatially coordinated

E Calvo-Roitberg, CL Carroll, SV Venev, GY Kim… - …, 2024 - pmc.ncbi.nlm.nih.gov
The expression of a precise mRNA transcriptome is crucial for establishing cell identity and
function, with dozens of alternative isoforms produced for a single gene sequence. The …

Integration of multi-omics technologies for molecular diagnosis in ataxia patients

S Audet, V Triassi, M Gelinas, N Legault-Cadieux… - Frontiers in …, 2024 - frontiersin.org
Background: Episodic ataxias are rare neurological disorders characterized by recurring
episodes of imbalance and coordination difficulties. Obtaining definitive molecular …

MicroRNAs provide negative feedback and stability in gene regulatory network models of cell-state transitions

M Razavi-Mohseni, MA Beer - Frontiers in Epigenetics and …, 2024 - frontiersin.org
The development of multicellular organisms occurs through a series of cell state transitions
controlled by gene regulatory networks. Central to these networks are transcription factors …