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[HTML][HTML] How genomics can help biodiversity conservation
The availability of public genomic resources can greatly assist biodiversity assessment,
conservation, and restoration efforts by providing evidence for scientifically informed …
conservation, and restoration efforts by providing evidence for scientifically informed …
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
The widespread occurrence of repetitive stretches of DNA in genomes of organisms across
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …
The Ensembl gene annotation system
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …
vertebrate species across a wide range of genome projects. Furthermore, it generates the …
A comparison of the innate and adaptive immune systems in cartilaginous fish, ray-finned fish, and lobe-finned fish
The immune system is composed of two subsystems—the innate immune system and the
adaptive immune system. The innate immune system is the first to respond to pathogens and …
adaptive immune system. The innate immune system is the first to respond to pathogens and …
Mechanisms to mitigate the trade-off between growth and defense
Plants have evolved an array of defenses against pathogens. However, mounting a defense
response frequently comes with the cost of a reduction in growth and reproduction, carrying …
response frequently comes with the cost of a reduction in growth and reproduction, carrying …
A cold-blooded view of adaptive immunity
MF Flajnik - Nature Reviews Immunology, 2018 - nature.com
The adaptive immune system arose 500 million years ago in ectothermic (cold-blooded)
vertebrates. Classically, the adaptive immune system has been defined by the presence of …
vertebrates. Classically, the adaptive immune system has been defined by the presence of …
Toll-like receptors, associated biological roles, and signaling networks in non-mammals
The innate immune system is the first line of defense against pathogens, which is initiated by
the recognition of pathogen-associated molecular patterns (PAMPs) and endogenous …
the recognition of pathogen-associated molecular patterns (PAMPs) and endogenous …
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
R Kajitani, K Toshimoto, H Noguchi, A Toyoda… - Genome …, 2014 - genome.cshlp.org
Although many de novo genome assembly projects have recently been conducted using
high-throughput sequencers, assembling highly heterozygous diploid genomes is a …
high-throughput sequencers, assembling highly heterozygous diploid genomes is a …
The oyster genome reveals stress adaptation and complexity of shell formation
Abstract The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but
genomically poorly explored phyla, the Mollusca. Here we report the sequencing and …
genomically poorly explored phyla, the Mollusca. Here we report the sequencing and …
CD4 helper and CD8 cytotoxic T cell differentiation
I Taniuchi - Annual review of Immunology, 2018 - annualreviews.org
A fundamental question in developmental immunology is how bipotential thymocyte
precursors generate both CD4+ helper and CD8+ cytotoxic T cell lineages. The MHC …
precursors generate both CD4+ helper and CD8+ cytotoxic T cell lineages. The MHC …