Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

[HTML][HTML] A pragmatic guide to enrichment strategies for mass spectrometry–based glycoproteomics

NM Riley, CR Bertozzi, SJ Pitteri - Molecular & Cellular Proteomics, 2021 - Elsevier
Glycosylation is a prevalent, yet heterogeneous modification with a broad range of
implications in molecular biology. This heterogeneity precludes enrichment strategies that …

Humoral and circulating follicular helper T cell responses in recovered patients with COVID-19

JA Juno, HX Tan, WS Lee, A Reynaldi, HG Kelly… - Nature medicine, 2020 - nature.com
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has
dramatically expedited global vaccine development efforts,–, most targeting the viral …

Optimal Dissociation Methods Differ for N- and O-Glycopeptides

NM Riley, SA Malaker, MD Driessen… - Journal of proteome …, 2020 - ACS Publications
Site-specific characterization of glycosylation requires intact glycopeptide analysis, and
recent efforts have focused on how to best interrogate glycopeptides using tandem mass …

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

R Kawahara, A Chernykh, K Alagesan, M Bern… - Nature …, 2021 - nature.com
Glycoproteomics is a powerful yet analytically challenging research tool. Software packages
aiding the interpretation of complex glycopeptide tandem mass spectra have appeared, but …

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis

NM Riley, AS Hebert, MS Westphall, JJ Coon - Nature communications, 2019 - nature.com
Protein glycosylation is a highly important, yet poorly understood protein post-translational
modification. Thousands of possible glycan structures and compositions create potential for …

Critical considerations in N-glycoproteomics

TH Chau, A Chernykh, R Kawahara… - Current Opinion in …, 2023 - Elsevier
N-Glycoproteomics, the system-wide study of glycans asparagine-linked to protein carriers,
holds a unique and still largely untapped potential to provide deep insights into the …

O-Pair Search with MetaMorpheus for O-glycopeptide characterization

L Lu, NM Riley, MR Shortreed, CR Bertozzi, LM Smith - Nature Methods, 2020 - nature.com
Abstract We report O-Pair Search, an approach to identify O-glycopeptides and localize O-
glycosites. Using paired collision-and electron-based dissociation spectra, O-Pair Search …

The role of electron transfer dissociation in modern proteomics

NM Riley, JJ Coon - Analytical Chemistry, 2018 - ACS Publications
(MS) and MS-driven proteomics have continued to develop as the premier tools for
characterizing proteome composition, structure, and function. 2 The new era of proteomics …

[HTML][HTML] Meta-heterogeneity: evaluating and describing the diversity in glycosylation between sites on the same glycoprotein

T Čaval, AJR Heck, KR Reiding - Molecular & Cellular Proteomics, 2021 - Elsevier
Mass spectrometry–based glycoproteomics has gone through some incredible
developments over the last few years. Technological advances in glycopeptide enrichment …