Loss to gain: pseudogenes in microorganisms, focusing on eubacteria, and their biological significance

Y Yang, P Wang, SE Qaidi, PR Hardwidge… - Applied Microbiology …, 2024 - Springer
Pseudogenes are defined as “non-functional” copies of corresponding parent genes. The
cognition of pseudogenes continues to be refreshed through accumulating and updating …

Detection of Anaplasma and Ehrlichia bacteria in humans, wildlife, and ticks in the Amazon rainforest

M Buysse, R Koual, F Binetruy, B de Thoisy… - Nature …, 2024 - nature.com
Tick-borne bacteria of the genera Ehrlichia and Anaplasma cause several emerging human
infectious diseases worldwide. In this study, we conduct an extensive survey for Ehrlichia …

Evolutionary insights into the emergence of virulent Leptospira spirochetes

A Giraud-Gatineau, C Nieves, LB Harrison… - PLoS …, 2024 - journals.plos.org
Pathogenic Leptospira are spirochete bacteria which cause leptospirosis, a re-emerging
zoonotic disease of global importance. Here, we use a recently described lineage of …

A dual endosymbiosis supports nutritional adaptation to hematophagy in the invasive tick Hyalomma marginatum

M Buysse, AM Floriano, Y Gottlieb, T Nardi… - Elife, 2021 - elifesciences.org
Many animals are dependent on microbial partners that provide essential nutrients lacking
from their diet. Ticks, whose diet consists exclusively on vertebrate blood, rely on maternally …

Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis

CR Armbruster, CW Marshall, AI Garber, JA Melvin… - Cell reports, 2021 - cell.com
Pseudomonas aeruginosa notoriously adapts to the airways of people with cystic fibrosis
(CF), yet how infection-site biogeography and associated evolutionary processes vary as …

Pseudogenes in plasmid genomes reveal past transitions in plasmid mobility

DM Hanke, Y Wang, T Dagan - Nucleic Acids Research, 2024 - academic.oup.com
Evidence for gene non-functionalization due to mutational processes is found in genomes in
the form of pseudogenes. Pseudogenes are known to be rare in prokaryote chromosomes …

A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis

H Zhao, R Zhang, J Wu, L Meng, Y Okazaki… - Virus …, 2023 - academic.oup.com
Most fungal viruses are RNA viruses, and no double-stranded DNA virus that infects fungi is
known to date. A recent study detected DNA polymerase genes that originated from large …

Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts

DR Speth, LM Zeller, JS Graf, WA Overholt… - Nature …, 2024 - nature.com
Abstract The endosymbiont Candidatus Azoamicus ciliaticola was proposed to generate
ATP for its eukaryotic host, an anaerobic ciliate of the Plagiopylea class, fulfilling a function …

Paleocene origin of a streamlined digestive symbiosis in leaf beetles

M García-Lozano, C Henzler, MÁG Porras, I Pons… - Current Biology, 2024 - cell.com
Timing the acquisition of a beneficial microbe relative to the evolutionary history of its host
can shed light on the adaptive impact of a partnership. Here, we investigated the onset and …

Arsenophonus symbiosis with louse flies: multiple origins, coevolutionary dynamics, and metabolic significance

J Martin Říhová, S Gupta, AC Darby, E Nováková… - Msystems, 2023 - journals.asm.org
Arsenophonus is a widespread insect symbiont with life strategies that vary from parasitism
to obligate mutualism. In insects living exclusively on vertebrate blood, mutualistic …