Protein thermostability engineering

HP Modarres, MR Mofrad, A Sanati-Nezhad - RSC advances, 2016 - pubs.rsc.org
The use of enzymes for industrial and biomedical applications is limited to their function at
elevated temperatures. The principles of thermostability engineering need to be …

Fractal symmetry of protein interior: what have we learned?

A Banerji, I Ghosh - Cellular and Molecular Life Sciences, 2011 - Springer
The application of fractal dimension-based constructs to probe the protein interior dates
back to the development of the concept of fractal dimension itself. Numerous approaches …

Heterologous expression and biological characteristics of UGPases from Lactobacillus acidophilus

N Zhen, C Ye, Q Shen, X Zeng, Z Wu, Y Guo… - Applied Microbiology …, 2022 - Springer
Herein, two genes (LBA0625 and LBA1719) encoding UGPases (UDP-glucose
pyrophosphorylase) in Lactobacillus acidophilus (L. acidophilus) were successfully …

Revisiting the myths of protein interior: studying proteins with mass-fractal hydrophobicity-fractal and polarizability-fractal dimensions

A Banerji, I Ghosh - PLoS One, 2009 - journals.plos.org
A robust marker to describe mass, hydrophobicity and polarizability distribution holds the
key to deciphering structural and folding constraints within proteins. Since each of these …

Functional and bioinformatics analysis of an exopolysaccharide-related gene (epsN) from Lactobacillus kefiranofaciens ZW3

J Wang, W Tang, Y Zheng, Z **ng, Y Wang - Archives of microbiology, 2016 - Springer
A novel lactic acid bacteria strain Lactobacillus kefiranofaciens ZW3 exhibited the
characteristics of high production of exopolysaccharide (EPS). The epsN gene, located in …

Protein molecular surface mapped at different geometrical resolutions

DV Nicolau, E Paszek, F Fulga, DV Nicolau Jr - PloS one, 2013 - journals.plos.org
Many areas of biochemistry and molecular biology, both fundamental and applications-
orientated, require an accurate construction, representation and understanding of the …

[KNJIGA][B] Fractal symmetry of protein interior

A Banerji - 2013 - Springer
The essential question that fractal dimensions attempt to answer is about the scales in
Nature. This is not exactly a new question. From Euclid to Poincare to Mandelbrot, many …

Mathematical criteria to observe mesoscopic emergence of protein biochemical properties

A Banerji, I Ghosh - Journal of mathematical chemistry, 2011 - Springer
Proteins are regularly described with some general indices (entropy, enthalpy, free
energies, hydrophobicity, denaturation temperature etc.), which are inherently statistical in …

[PDF][PDF] Proteins will fold anyway!!

I Ghosh - Journal of Biomolecular Structure and Dynamics, 2011 - Taylor & Francis
Protein folding is one of the most challenging physiological phenomena which has intrigued
every discipline of research in science and several thousands researchers are working in …

Studying protein interior with fractal dimension

A Banerji, A Banerji - Fractal Symmetry of Protein Interior, 2013 - Springer
Here we look at the interior of protein structures, as viewed through the prism of fractal
dimensions. History of application of fractal dimension-based constructs to probe protein …