Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations

JJ Salk, MW Schmitt, LA Loeb - Nature Reviews Genetics, 2018 - nature.com
Mutations, the fuel of evolution, are first manifested as rare DNA changes within a population
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …

Advanced DNA-based point-of-care diagnostic methods for plant diseases detection

HY Lau, JR Botella - Frontiers in plant science, 2017 - frontiersin.org
Diagnostic technologies for the detection of plant pathogens with point-of-care capability
and high multiplexing ability are an essential tool in the fight to reduce the large agricultural …

Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders

T Wang, K Hoekzema, D Vecchio, H Wu… - Nature …, 2020 - nature.com
Most genes associated with neurodevelopmental disorders (NDDs) were identified with an
excess of de novo mutations (DNMs) but the significance in case–control mutation burden …

The contribution of de novo coding mutations to autism spectrum disorder

I Iossifov, BJ O'roak, SJ Sanders, M Ronemus… - Nature, 2014 - nature.com
Whole exome sequencing has proven to be a powerful tool for understanding the genetic
architecture of human disease. Here we apply it to more than 2,500 simplex families, each …

[HTML][HTML] Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions

KM Girskis, AB Stergachis, EM DeGennaro, RN Doan… - Neuron, 2021 - cell.com
Human accelerated regions (HARs) are the fastest-evolving regions of the human genome,
and many are hypothesized to function as regulatory elements that drive human-specific …

De novo genic mutations among a Chinese autism spectrum disorder cohort

T Wang, H Guo, B **ong, HAF Stessman, H Wu… - Nature …, 2016 - nature.com
Recurrent de novo (DN) and likely gene-disruptive (LGD) mutations contribute significantly
to autism spectrum disorders (ASDs) but have been primarily investigated in European …

Massively parallel knock-in engineering of human T cells

X Dai, JJ Park, Y Du, Z Na, SZ Lam, RD Chow… - Nature …, 2023 - nature.com
The efficiency of targeted knock-in for cell therapeutic applications is generally low, and the
scale is limited. In this study, we developed CLASH, a system that enables high-efficiency …

A germline homozygous mutation in the base-excision repair gene NTHL1 causes adenomatous polyposis and colorectal cancer

RDA Weren, MJL Ligtenberg, CM Kets, RM De Voer… - Nature …, 2015 - nature.com
The genetic cause underlying the development of multiple colonic adenomas, the
premalignant precursors of colorectal cancer (CRC), frequently remains unresolved in …

Ultra-sensitive sequencing identifies high prevalence of clonal hematopoiesis-associated mutations throughout adult life

R Acuna-Hidalgo, H Sengul, M Steehouwer… - The American Journal of …, 2017 - cell.com
Clonal hematopoiesis results from somatic mutations in hematopoietic stem cells, which give
an advantage to mutant cells, driving their clonal expansion and potentially leading to …

Recurrent de novo mutations implicate novel genes underlying simplex autism risk

BJ O'roak, HA Stessman, EA Boyle… - Nature …, 2014 - nature.com
Autism spectrum disorder (ASD) has a strong but complex genetic component. Here we
report on the resequencing of 64 candidate neurodevelopmental disorder risk genes in …