Incongruence in the phylogenomics era

JL Steenwyk, Y Li, X Zhou, XX Shen… - Nature Reviews Genetics, 2023 - nature.com
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …

Phyllosphere microbiome

R Sohrabi, BC Paasch, JA Liber… - Annual review of plant …, 2023 - annualreviews.org
The aboveground parts of terrestrial plants are colonized by a variety of microbes that
collectively constitute the phyllosphere microbiota. Decades of pioneering work using …

Phylogenomics and the rise of the angiosperms

AR Zuntini, T Carruthers, O Maurin, PC Bailey… - Nature, 2024 - nature.com
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …

Smart reprograming of plants against salinity stress using modern biotechnological tools

A Raza, J Tabassum, AZ Fakhar, R Sharif… - Critical reviews in …, 2023 - Taylor & Francis
Climate change gives rise to numerous environmental stresses, including soil salinity.
Salinity/salt stress is the second biggest abiotic factor affecting agricultural productivity …

Metabolomics-centered mining of plant metabolic diversity and function: Past decade and future perspectives

S Shen, C Zhan, C Yang, AR Fernie, J Luo - Molecular plant, 2023 - cell.com
Plants are natural experts in organic synthesis, being able to generate large numbers of
specific metabolites with widely varying structures that help them adapt to variable survival …

[HTML][HTML] The Chinese pine genome and methylome unveil key features of conifer evolution

S Niu, J Li, W Bo, W Yang, A Zuccolo, S Giacomello… - Cell, 2022 - cell.com
Conifers dominate the world's forest ecosystems and are the most widely planted tree
species. Their giant and complex genomes present great challenges for assembling a …

Dynamic genome evolution in a model fern

DB Marchant, G Chen, S Cai, F Chen, P Schafran… - Nature Plants, 2022 - nature.com
The large size and complexity of most fern genomes have hampered efforts to elucidate
fundamental aspects of fern biology and land plant evolution through genome-enabled …

Representation and participation across 20 years of plant genome sequencing

RA Marks, S Hotaling, PB Frandsen, R VanBuren - Nature plants, 2021 - nature.com
The field of plant genome sequencing has grown rapidly in the past 20 years, leading to
increases in the quantity and quality of publicly available genomic resources. The growing …

Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …