Deciphering the impact of genomic variation on function
Code of Conduct Committee (alphabetical by last name … - Nature, 2024 - nature.com
Our genomes influence nearly every aspect of human biology—from molecular and cellular
functions to phenotypes in health and disease. Studying the differences in DNA sequence …
functions to phenotypes in health and disease. Studying the differences in DNA sequence …
Genomic language models: opportunities and challenges
Large language models (LLMs) are having transformative impacts across a wide range of
scientific fields, particularly in the biomedical sciences. Just as the goal of natural language …
scientific fields, particularly in the biomedical sciences. Just as the goal of natural language …
Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation
Sequence-based machine-learning models trained on genomics data improve genetic
variant interpretation by providing functional predictions describing their impact on the cis …
variant interpretation by providing functional predictions describing their impact on the cis …
The expanding diagnostic toolbox for rare genetic diseases
KD Kernohan, KM Boycott - Nature Reviews Genetics, 2024 - nature.com
Genomic technologies, such as targeted, exome and short-read genome sequencing
approaches, have revolutionized the care of patients with rare genetic diseases. However …
approaches, have revolutionized the care of patients with rare genetic diseases. However …
SSEmb: A joint embedding of protein sequence and structure enables robust variant effect predictions
The ability to predict how amino acid changes affect proteins has a wide range of
applications including in disease variant classification and protein engineering. Many …
applications including in disease variant classification and protein engineering. Many …
Will variants of uncertain significance still exist in 2030?
Summary In 2020, the National Human Genome Research Institute (NHGRI) made ten" bold
predictions," including that" the clinical relevance of all encountered genomic variants will be …
predictions," including that" the clinical relevance of all encountered genomic variants will be …
Advancing variant effect prediction using protein language models
Advancing variant effect prediction using protein language models | Nature Genetics Skip to main
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Predicting pathogenic protein variants
Many of the genetic mutations that cause disease in humans occur in protein-coding
regions. Although the capacity to sequence DNA and identify these variants has …
regions. Although the capacity to sequence DNA and identify these variants has …
Randomizing the human genome by engineering recombination between repeat elements
We lack tools to edit DNA sequences at scales necessary to study 99% of the human
genome that is noncoding. To address this gap, we applied CRISPR prime editing to insert …
genome that is noncoding. To address this gap, we applied CRISPR prime editing to insert …
Site-saturation mutagenesis of 500 human protein domains
Missense variants that change the amino acid sequences of proteins cause one-third of
human genetic diseases. Tens of millions of missense variants exist in the current human …
human genetic diseases. Tens of millions of missense variants exist in the current human …