Wastewater-based surveillance as a tool for public health action: SARS-CoV-2 and beyond

MD Parkins, BE Lee, N Acosta, M Bautista… - Clinical microbiology …, 2024 - journals.asm.org
Wastewater-based surveillance (WBS) has undergone dramatic advancement in the context
of the coronavirus disease 2019 (COVID-19) pandemic. The power and potential of this …

Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee

D Turner, AN Shkoporov, C Lood, AD Millard… - Archives of …, 2023 - Springer
This article summarises the activities of the Bacterial Viruses Subcommittee of the
International Committee on Taxonomy of Viruses for the period of March 2021− March 2022 …

Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area

HD Greenwald, LC Kennedy, A Hinkle, ON Whitney… - Water research X, 2021 - Elsevier
Wastewater surveillance for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-
2) RNA can be integrated with COVID-19 case data to inform timely pandemic response …

Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage

PJ Arts, JD Kelly, CM Midgley, K Anglin, S Lu… - Msphere, 2023 - journals.asm.org
Wastewater-based epidemiology (WBE) emerged during the coronavirus disease 2019
(COVID-19) pandemic as a scalable and broadly applicable method for community-level …

RNA viromics of Southern California wastewater and detection of SARS-CoV-2 single-nucleotide variants

JA Rothman, TB Loveless, J Kapcia III… - Applied and …, 2021 - journals.asm.org
Municipal wastewater provides an integrated sample of a diversity of human-associated
microbes across a sewershed, including viruses. Wastewater-based epidemiology (WBE) is …

Assessing phage-host population dynamics by reintroducing virulent viruses to synthetic microbiomes

J Wilde, R Boyes, AV Robinson, BA Daisley… - Cell Host & Microbe, 2024 - cell.com
Microbiomes feature complex interactions between diverse bacteria and bacteriophages.
Synthetic microbiomes offer a powerful way to study these interactions; however, a major …

A previously undescribed highly prevalent phage identified in a Danish Enteric Virome Catalog

L Van Espen, EG Bak, L Beller, L Close, W Deboutte… - Msystems, 2021 - journals.asm.org
Gut viruses are important, yet often neglected, players in the complex human gut microbial
ecosystem. Recently, the number of human gut virome studies has been increasing; …

A catalog of 48,425 nonredundant viruses from oral metagenomes expands the horizon of the human oral virome

S Li, R Guo, Y Zhang, P Li, F Chen, X Wang, J Li, Z Jie… - Iscience, 2022 - cell.com
The human oral cavity is a hotspot of numerous, mostly unexplored, viruses that are
important for maintaining oral health and microbiome homeostasis. Here, we analyzed …

Initial map** of the New York City wastewater virome

K Gulino, J Rahman, M Badri, J Morton, R Bonneau… - Msystems, 2020 - journals.asm.org
Bacteriophages are abundant members of all microbiomes studied to date, influencing
microbial communities through interactions with their bacterial hosts. Despite their functional …

Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020–21 reveals widespread transcription …

JA Rothman, A Saghir, SA Chung, N Boyajian, T Dinh… - Water Research, 2023 - Elsevier
Municipal wastewater provides a representative sample of human fecal waste across a
catchment area and contains a wide diversity of microbes. Sequencing wastewater samples …