A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

JU Loers, V Vermeirssen - Briefings in Bioinformatics, 2024‏ - academic.oup.com
Eukaryotic gene regulation is a combinatorial, dynamic, and quantitative process that plays
a vital role in development and disease and can be modeled at a systems level in gene …

Single-cell EpiChem jointly measures drug–chromatin binding and multimodal epigenome

C Dong, X Meng, T Zhang, Z Guo, Y Liu, P Wu… - Nature …, 2024‏ - nature.com
Studies of molecular and cellular functions of small-molecule inhibitors in cancer treatment,
eliciting effects by targeting genome and epigenome associated proteins, requires …

Atlas-scale single-cell DNA methylation profiling with sciMETv3

RV Nichols, LE Rylaarsdam, BL O'Connell, Z Shipony… - Cell Genomics, 2025‏ - cell.com
Single-cell methods to assess DNA methylation have not achieved the same level of cell
throughput per experiment compared to other modalities, with large-scale datasets requiring …

Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility

K Queitsch, TW Moore, BL O'Connell, RV Nichols… - Cell Reports …, 2023‏ - cell.com
Single-cell whole-genome sequencing (scWGS) enables the assessment of genome-level
molecular differences between individual cells with particular relevance to genetically …

Integration of single-cell transcriptome and chromatin accessibility and its application on tumor investigation

C Yang, Y **, Y Yin - Life Medicine, 2024‏ - academic.oup.com
The advent of single-cell sequencing techniques has not only revolutionized the
investigation of biological processes but also significantly contributed to unraveling cellular …

Epigenetic and Transcriptomic Alterations Precede Amyloidosis in the Hippocampus of the Alzheimer's Disease AppNL-GF Knock in Mouse Model

M Okhovat, C Layman, BA Davis, A Pederson, A O'Niel… - bioRxiv, 2025‏ - biorxiv.org
Detecting and understanding the early stages of Alzheimer's disease (AD) is essential for
uncovering initial mechanisms of neuropathology and devising effective interventions. In this …

[HTML][HTML] 单细胞测序在干细胞生物学中的应用研究进展

肖邦, 朱静, 徐莎, 陈国栋, 黄超 - 海军军医大学学报, 2023‏ - html.rhhz.net
细胞间的变异或异质性是干细胞群的基本和内在特征. 传统的组学分析在混合细胞群体上进行,
导致这些差异被掩盖. **年来, 单细胞基因组, 表观基因组, 转录组测序等技术发展迅速 …