The role of conformational dynamics and allostery in modulating protein evolution

P Campitelli, T Modi, S Kumar… - Annual review of …, 2020 - annualreviews.org
Advances in sequencing techniques and statistical methods have made it possible not only
to predict sequences of ancestral proteins but also to identify thousands of mutations in the …

Molecular mechanisms of disease-causing missense mutations

S Stefl, H Nishi, M Petukh, AR Panchenko… - Journal of molecular …, 2013 - Elsevier
Genetic variations resulting in a change of amino acid sequence can have a dramatic effect
on stability, hydrogen bond network, conformational dynamics, activity and many other …

Quantitative missense variant effect prediction using large-scale mutagenesis data

VE Gray, RJ Hause, J Luebeck, J Shendure… - Cell systems, 2018 - cell.com
Large datasets describing the quantitative effects of mutations on protein function are
becoming increasingly available. Here, we leverage these datasets to develop Envision …

Structural and functional biology of aldo-keto reductase steroid-transforming enzymes

TM Penning, P Wangtrakuldee, RJ Auchus - Endocrine reviews, 2019 - academic.oup.com
Aldo-keto reductases (AKRs) are monomeric NAD (P)(H)-dependent oxidoreductases that
play pivotal roles in the biosynthesis and metabolism of steroids in humans. AKR1C …

Protein–protein interaction sites are hot spots for disease‐associated nonsynonymous SNPs

A David, R Razali, MN Wass, MJE Sternberg - Human mutation, 2012 - Wiley Online Library
Many nonsynonymous single nucleotide polymorphisms (nsSNPs) are disease causing due
to effects at protein‐protein interfaces. We have integrated a database of the three …

AKR1C3 (type 5 17β-hydroxysteroid dehydrogenase/prostaglandin F synthase): Roles in malignancy and endocrine disorders

TM Penning - Molecular and cellular endocrinology, 2019 - Elsevier
Abstract Aldo-Keto-Reductase 1C3 (type 5 17β-hydroxysteroid dehydrogenase
(HSD)/prostaglandin (PG) F 2α synthase) is the only 17β-HSD that is not a short-chain …

Genes, mutations, and human inherited disease at the dawn of the age of personalized genomics

DN Cooper, JM Chen, EV Ball, K Howells… - Human …, 2010 - Wiley Online Library
The number of reported germline mutations in human nuclear genes, either underlying or
associated with inherited disease, has now exceeded 100,000 in more than 3,700 different …

Recent advances in machine learning variant effect prediction tools for protein engineering

J Horne, D Shukla - Industrial & engineering chemistry research, 2022 - ACS Publications
Proteins are Nature's molecular machinery and comprise diverse roles while consisting of
chemically similar building blocks. In recent years, protein engineering and design have …

Human aldo-keto reductases and the metabolic activation of polycyclic aromatic hydrocarbons

TM Penning - Chemical research in toxicology, 2014 - ACS Publications
Aldo-keto reductases (AKRs) are promiscuous NAD (P)(H) dependent oxidoreductases
implicated in the metabolic activation of polycyclic aromatic hydrocarbons (PAH). These …

Loss of exon identity is a common mechanism of human inherited disease

T Sterne-Weiler, J Howard, M Mort, DN Cooper… - Genome …, 2011 - genome.cshlp.org
It is widely accepted that at least 10% of all mutations causing human inherited disease
disrupt splice-site consensus sequences. In contrast to splice-site mutations, the role of …