Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean

N Jiao, GJ Herndl, DA Hansell, R Benner… - Nature Reviews …, 2010 - nature.com
The biological pump is a process whereby CO2 in the upper ocean is fixed by primary
producers and transported to the deep ocean as sinking biogenic particles or as dissolved …

Ecology of aerobic anoxygenic phototrophs in aquatic environments

M Koblížek - FEMS Microbiology Reviews, 2015 - academic.oup.com
Recognition of the environmental role of photoheterotrophic bacteria has been one of the
main themes of aquatic microbiology over the last 15 years. Aside from cyanobacteria and …

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

P Flombaum, JL Gallegos, RA Gordillo… - Proceedings of the …, 2013 - pnas.org
The Cyanobacteria Prochlorococcus and Synechococcus account for a substantial fraction
of marine primary production. Here, we present quantitative niche models for these lineages …

Genomic-based taxonomic classification of the family Erythrobacteraceae

L Xu, C Sun, C Fang, A Oren… - International Journal of …, 2020 - microbiologyresearch.org
The family Erythrobacteraceae, belonging to the order Sphingomonadales, class
Alphaproteobacteria, is globally distributed in various environments. Currently, this family …

The oligotrophic ocean is heterotrophic

CM Duarte, A Regaudie-de-Gioux… - Annual Review of …, 2013 - annualreviews.org
Incubation (in vitro) and incubation-free (in situ) methods, each with their own advantages
and limitations, have been used to derive estimates of net community metabolism in the …

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

M Martinez-Garcia, BK Swan, NJ Poulton… - The ISME …, 2012 - academic.oup.com
Recent discoveries suggest that photoheterotrophs (rhodopsin-containing bacteria (RBs)
and aerobic anoxygenic phototrophs (AAPs)) and chemoautotrophs may be significant for …

The microbial carbon pump: from genes to ecosystems

N Jiao, Q Zheng - Applied and Environmental Microbiology, 2011 - journals.asm.org
The majority of marine dissolved organic carbon (DOC) is resistant to biological degradation
and thus can remain in the water column for thousands of years, constituting carbon …

Effects of large river dam regulation on bacterioplankton community structure

C Ruiz-González, L Proia, I Ferrera… - FEMS microbiology …, 2013 - academic.oup.com
Large rivers are commonly regulated by damming, yet the effects of such disruption on
prokaryotic communities have seldom been studied. We describe the effects of the three …

Paddy soil microbial communities driven by environment-and microbe-microbe interactions: A case study of elevation-resolved microbial communities in a rice terrace

W Sun, E **ao, Z Pu, V Krumins, Y Dong, B Li… - Science of the Total …, 2018 - Elsevier
Rice paddies are a significant source of the greenhouse gas methane, which mainly
originates from microbial activity. Methane generation in anaerobic systems involves …

Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate

HA Giebel, D Kalhoefer, A Lemke, S Thole… - The ISME …, 2011 - academic.oup.com
The Roseobacter group and SAR11 clade constitute high proportions of the marine
bacterioplankton, but only scarce information exists on the abundance of distinct populations …