Recent advances in user-friendly computational tools to engineer protein function

CE Sequeiros-Borja, B Surpeta… - Briefings in …, 2021 - academic.oup.com
Progress in technology and algorithms throughout the past decade has transformed the field
of protein design and engineering. Computational approaches have become well-engrained …

An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass

J Salamanca Viloria, MF Allega, M Lambrughi… - Scientific reports, 2017 - nature.com
Proteins are highly dynamic entities attaining a myriad of different conformations. Protein
side chains change their states during dynamics, causing clashes that are propagated at …

[HTML][HTML] Role of a high centrality residue in protein dynamics and thermal stability

VM Almeida, A Chaudhuri, MVC Cardoso… - Journal of structural …, 2021 - Elsevier
Abstract Centralities determined from Residue Interaction Networks (RIN) in proteins have
been used to predict aspects of their structure and dynamics. Here, we correlate the …

A comparative study on structural proteins of viruses that belong to the identical family

AA Navish, R Uthayakumar - The European Physical Journal Special …, 2023 - Springer
Recent studies have focused on the similarity between SARS Cov-2 and various viruses
from the Coronaviridae family (such as MERS Cov, SARS Cov and Bat Cov RaTG 13) to …

Conformation, Dynamics, and Energetics of a Conserved Signaling Module

A Chau - 2022 - search.proquest.com
Cyclic nucleotide binding (CNB) domain is a structurally conserved signaling module that
regulates the activity of protein kinases, transcription factors, and gated ion channels. These …

A Study on the Variants and Subvariants of a Solitary Virus

AA Navish, R Uthayakumar - … Signatures in the Dynamics of an …, 2023 - taylorfrancis.com
The countries of the world are still struggling to get rid of the impact of SARS-CoV-2. As if this
is not enough, different variants of Corona are continuously evolving. These are discovered …

Papel das redes estruturais proteicas nas propriedades de uma beta-glicosidase

VP Souza - 2017 - teses.usp.br
A análise de proteínas como redes é uma ferramenta poderosa para compreender as suas
propriedades e a importância relativa de seus resíduos. Nesta análise, os resíduos que …

应用图论分析与最优化理论来数据挖掘大规模水牛普里昂蛋白结构数据

张家普, 王凤 - 运筹学学报, 2017 - ort.shu.edu.cn
Graph theory and optimization theory are clearly very useful in the study of protein
structures. Firstly, this paper is to research/review graph theory models in studies of protein …

[ЦИТИРОВАНИЕ][C] Using graph theory and optimization theory to do data mining the large scale buffalo prion protein structure database

JP Zhang, S Chatterjee, F Wang - Oper Res Trans, 2017