[HTML][HTML] Application of computational biology and artificial intelligence in drug design

Y Zhang, M Luo, P Wu, S Wu, TY Lee, C Bai - International journal of …, 2022 - mdpi.com
Traditional drug design requires a great amount of research time and developmental
expense. Booming computational approaches, including computational biology, computer …

Bridging molecular docking to molecular dynamics in exploring ligand-protein recognition process: An overview

V Salmaso, S Moro - Frontiers in pharmacology, 2018 - frontiersin.org
Computational techniques have been applied in the drug discovery pipeline since the
1980s. Given the low computational resources of the time, the first molecular modeling …

SwissParam 2023: a modern web-based tool for efficient small molecule parametrization

M Bugnon, M Goullieux, UF Röhrig… - Journal of chemical …, 2023 - ACS Publications
Most steps of drug discovery are now routinely supported and accelerated by computer-
aided drug design tools. Among them, structure-based approaches use the three …

Artificial intelligence and machine learning approaches for drug design: Challenges and opportunities for the pharmaceutical industries

C Selvaraj, I Chandra, SK Singh - Molecular diversity, 2022 - Springer
The global spread of COVID-19 has raised the importance of pharmaceutical drug
development as intractable and hot research. Develo** new drug molecules to overcome …

Computer-aided drug design methods

W Yu, AD MacKerell Jr - Antibiotics: methods and protocols, 2016 - Springer
Computational approaches are useful tools to interpret and guide experiments to expedite
the antibiotic drug design process. Structure-based drug design (SBDD) and ligand-based …

Molecular docking and molecular dynamics simulation

S Singh, QB Baker, DB Singh - Bioinformatics, 2022 - Elsevier
Computational drug discovery methods provide valuable insights into the understanding of
protein–ligand interaction systems in a virtual manner. Molecular docking and …

Design of molecularly imprinted polymers (MIP) using computational methods: A review of strategies and approaches

E Mohsenzadeh, V Ratautaite, E Brazys… - Wiley …, 2024 - Wiley Online Library
This paper focuses on the computationally assisted design of molecularly imprinted
polymers (MIP), emphasizing the selected strategies and chosen methods of approach. In …

CHARMM additive and polarizable force fields for biophysics and computer-aided drug design

K Vanommeslaeghe, AD MacKerell Jr - Biochimica et Biophysica Acta (BBA …, 2015 - Elsevier
Abstract Background Molecular Mechanics (MM) is the method of choice for computational
studies of biomolecular systems owing to its modest computational cost, which makes it …

Applications of density functional theory in COVID-19 drug modeling

N Ye, Z Yang, Y Liu - Drug Discovery Today, 2022 - Elsevier
The rapidly evolving Coronavirus 2019 (COVID-19) pandemic has led to millions of deaths
around the world, highlighting the pressing need to develop effective antiviral …

Computational Studies of Aflatoxin B1 (AFB1): A Review

J Martínez, M Hernández-Rodríguez… - Toxins, 2023 - mdpi.com
Aflatoxin B1 (AFB1) exhibits the most potent mutagenic and carcinogenic activity among
aflatoxins. For this reason, AFB1 is recognized as a human group 1 carcinogen by the …