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A practical guide to DNA metabarcoding for entomological ecologists
1. DNA metabarcoding is a cost‐effective species identification approach with great potential
to assist entomological ecologists. This review presents a practical guide to help …
to assist entomological ecologists. This review presents a practical guide to help …
DNA metabarcoding for the characterization of terrestrial microbiota—pitfalls and solutions
Soil-borne microbes are major ecological players in terrestrial environments since they cycle
organic matter, channel nutrients across trophic levels and influence plant growth and …
organic matter, channel nutrients across trophic levels and influence plant growth and …
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on
Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic …
Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic …
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
MI Brandt, B Trouche, L Quintric… - Molecular Ecology …, 2021 - Wiley Online Library
Environmental DNA metabarcoding is a powerful tool for studying biodiversity. However,
bioinformatic approaches need to adjust to the diversity of taxonomic compartments targeted …
bioinformatic approaches need to adjust to the diversity of taxonomic compartments targeted …
eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA sequences exploiting Nextflow and Singularity
M Mousavi‐Derazmahalleh, A Stott… - Molecular Ecology …, 2021 - Wiley Online Library
Metabarcoding of environmental DNA (eDNA) when coupled with high throughput
sequencing is revolutionising the way biodiversity can be monitored across a wide range of …
sequencing is revolutionising the way biodiversity can be monitored across a wide range of …
[HTML][HTML] Encapsulated in sediments: eDNA deciphers the ecosystem history of one of the most polluted European marine sites
The Anthropocene is characterized by dramatic ecosystem changes driven by human
activities. The impact of these activities can be assessed by different geochemical and …
activities. The impact of these activities can be assessed by different geochemical and …
APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA metabarcoding data
DNA metabarcoding is an emerging approach to assess and monitor biodiversity worldwide
and consequently the number and size of data sets increases exponentially. To date, no …
and consequently the number and size of data sets increases exponentially. To date, no …
[HTML][HTML] Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for …
Ecological assessment of lakes and rivers using benthic diatom assemblages currently
requires considerable taxonomic expertise to identify species using light microscopy. This …
requires considerable taxonomic expertise to identify species using light microscopy. This …
Monitoring the ecological status of rivers with diatom eDNA metabarcoding: A comparison of taxonomic markers and analytical approaches for the inference of a …
Recently, several studies demonstrated the usefulness of diatom eDNA metabarcoding as
an alternative to assess the ecological quality of rivers and streams. However, the choice of …
an alternative to assess the ecological quality of rivers and streams. However, the choice of …
Microbial diversity alteration reveals biomarkers of contamination in soil-river-lake continuum
Microbial communities inhabiting soil-water-sediment continuum in coastal areas provide
important ecosystem services. Their adaptation in response to environmental stressors …
important ecosystem services. Their adaptation in response to environmental stressors …