A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions

B Kumar, E Lorusso, B Fosso, G Pesole - Frontiers in microbiology, 2024 - frontiersin.org
Metagenomics, Metabolomics, and Metaproteomics have significantly advanced our
knowledge of microbial communities by providing culture-independent insights into their …

Unraveling the spatio-temporal dynamics of soil and root-associated microbiomes in Texas olive orchards

DP Thenappan, D Thompson, M Joshi, AK Mishra… - Scientific Reports, 2024 - nature.com
Understanding the structure and diversity of microbiomes is critical to establishing olives in
non-traditional production areas. Limited studies have investigated soil and root-associated …

Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils

VA Seitz, BB McGivern, MA Borton, JM Chaparro… - Microbiome, 2024 - Springer
Background Cover crop** is an agricultural practice that uses secondary crops to support
the growth of primary crops through various mechanisms including erosion control, weed …

Deciphering insights into rhizospheric microbial community and soil parameters under the influence of herbicides in zero-tillage tropical rice-agroecosystem

L Bhardwaj, B Reddy, SK Dubey - Environmental Research, 2023 - Elsevier
Extensive use of chemicals like herbicides in rice and other fields to manage weeds is
expected to have a lasting influence on the soil environment. Considering this rationale, we …

[HTML][HTML] Microbiological Indicators for Assessing the Effects of Agricultural Practices on Soil Health: A Review

MV Semenov, AD Zhelezova, NA Ksenofontova… - Agronomy, 2025 - mdpi.com
Agricultural practices significantly impact soil properties and ecological functions,
highlighting the importance of comprehensive soil health assessments. Traditionally, these …

Plant-soil hydraulic interaction and rhizosphere bacterial community under biochar and CO2 enrichment

YC Wang, JJ Ni - Science of The Total Environment, 2024 - Elsevier
The increasing atmospheric CO 2 concentration is a global concern that affects the plant-
bacteria-soil system. Previous studies have investigated plant growth and bacteria activity …

[HTML][HTML] The microbiomes of various types of abandoned fallow soils of South Taiga (Novgorod Region, Russian North-West)

EV Abakumov, GV Gladkov, AK Kimeklis, EE Andronov - Agronomy, 2023 - mdpi.com
More than 30 years have passed after the collapse of the Soviet Union, and huge areas of
soil were left in a fallow state. The study of the microbiological status of fallow soils is an …

Bioinoculation with Pseudomonas aeruginosa P4 enhances the peanut root nodulation and nutrient status while enriching the plant-beneficial bacteria in rhizosphere

A Buch, V Gupta - Rhizosphere, 2024 - Elsevier
Fluorescent Pseudomonas species are well-known as effective plant growth promoting
rhizobacteria (PGPR), yet are relatively less explored for their multitrophic benefits. This …

[HTML][HTML] Long-term effect of repeated application of pig slurry digestate on microbial communities in arable soils

D Mora-Salguero, L Ranjard, T Morvan, S Dequiedt… - Heliyon, 2025 - cell.com
Anaerobic digestion represents an opportunity for converting organic waste (OW) into
valuable products: renewable energy (biogas) and a fertilizer (digestate). However, the long …

[PDF][PDF] Microbial Communities in Food Waste in Terms of Methanogenic and Residue Gob Remediation Potentials

L Wang, C Chen, Y Yang, Y Liu, F Cheng… - Polish Journal of …, 2024 - pjoes.com
Gobi beach management is a critical way to reduce carbon emissions but requires a large
amount of nutrients to support in the early stages, while food waste degradation and …