Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

Raman microspectroscopy for microbiology

KS Lee, Z Landry, FC Pereira, M Wagner… - Nature Reviews …, 2021 - nature.com
Raman microspectroscopy offers microbiologists a rapid and non-destructive technique to
assess the chemical composition of individual live microorganisms in near real time. In this …

Clinical perspective of antimicrobial resistance in bacteria

Y Zhu, WE Huang, Q Yang - Infection and drug resistance, 2022 - Taylor & Francis
Antimicrobial resistance (AMR) has become a global clinical problem in recent years. With
the discovery of antibiotics, infections were not a deadly problem for clinicians as they used …

Next-generation physiology approaches to study microbiome function at single cell level

R Hatzenpichler, V Krukenberg, RL Spietz… - Nature Reviews …, 2020 - nature.com
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …

A review of methods to determine viability, vitality, and metabolic rates in microbiology

O Braissant, M Astasov-Frauenhoffer… - Frontiers in …, 2020 - frontiersin.org
Viability and metabolic assays are commonly used as proxies to assess the overall
metabolism of microorganisms. The variety of these assays combined with little information …

Isolation and identification of bacteria by means of Raman spectroscopy

S Pahlow, S Meisel, D Cialla-May, K Weber… - Advanced drug delivery …, 2015 - Elsevier
Bacterial detection is a highly topical research area, because various fields of application
will benefit from the progress being made. Consequently, new and innovative strategies …

Stimulated Raman scattering microscopy: an emerging tool for drug discovery

WJ Tip**, M Lee, A Serrels, VG Brunton… - Chemical Society …, 2016 - pubs.rsc.org
Optical microscopy techniques have emerged as a cornerstone of biomedical research,
capable of probing the cellular functions of a vast range of substrates, whilst being minimally …

Single cell stable isotope probing in microbiology using Raman microspectroscopy

Y Wang, WE Huang, L Cui, M Wagner - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Single cell Raman spectra (SCRS) are label-free and intrinsic biochemical
profiles of single microbial cells.•A number of bands of SCRS shift if cells are labeled with …

Recent advances in the use of microfluidic technologies for single cell analysis

TW Murphy, Q Zhang, LB Naler, S Ma, C Lu - Analyst, 2018 - pubs.rsc.org
The inherent heterogeneity in cell populations has become of great interest and importance
as analytical techniques have improved over the past decades. With the advent of …

Metabolic-Activity-Based Assessment of Antimicrobial Effects by D2O-Labeled Single-Cell Raman Microspectroscopy

Y Tao, Y Wang, S Huang, P Zhu, WE Huang… - Analytical …, 2017 - ACS Publications
To combat the spread of antibiotic resistance, methods that quantitatively assess the
metabolism-inhibiting effects of drugs in a rapid and culture-independent manner are …