State of the art of molecular visualization in immersive virtual environments

D Kuťák, P Vázquez, T Isenberg… - Computer Graphics …, 2023 - Wiley Online Library
Visualization plays a crucial role in molecular and structural biology. It has been successfully
applied to a variety of tasks, including structural analysis and interactive drug design. While …

A survey of time series data visualization research

Y Fang, H Xu, J Jiang - IOP Conference Series: Materials …, 2020 - iopscience.iop.org
Time series data visualization integrates data analysis and mining, computer graphics,
interaction design and other technologies and methods. This paper first analyzes the …

InVADo: interactive visual analysis of molecular docking data

M Schäfer, N Brich, J Byška… - … on Visualization and …, 2023 - ieeexplore.ieee.org
Molecular docking is a key technique in various fields like structural biology, medicinal
chemistry, and biotechnology. It is widely used for virtual screening during drug discovery …

Compressing generalized trajectories of molecular motion for efficient detection of chemical interactions

MH Anowar, A Shamail, X Wang, G Trajcevski… - Information Systems, 2024 - Elsevier
Molecular Dynamics (MD) simulation is often used to study properties of various chemical
interactions in domains such as drug discovery and development, particularly when …

sMolBoxes: Dataflow model for molecular dynamics exploration

P Ulbrich, M Waldner, K Furmanová… - … on Visualization and …, 2022 - ieeexplore.ieee.org
We present sMolBoxes, a dataflow representation for the exploration and analysis of long
molecular dynamics (MD) simulations. When MD simulations reach millions of snapshots, a …

From complex data to clear insights: visualizing molecular dynamics trajectories

H Belghit, M Spivak, M Dauchez, M Baaden… - Frontiers in …, 2024 - frontiersin.org
Advances in simulations, combined with technological developments in high-performance
computing, have made it possible to produce a physically accurate dynamic representation …

Trends & opportunities in visualization for physiology: A multiscale overview

LA Garrison, I Kolesar, I Viola, H Hauser… - Computer graphics …, 2022 - Wiley Online Library
Combining elements of biology, chemistry, physics, and medicine, the science of human
physiology is complex and multifaceted. In this report, we offer a broad and multiscale …

Molsieve: a progressive visual analytics system for molecular dynamics simulations

R Hnatyshyn, J Zhao, D Perez, J Ahrens… - … on Visualization and …, 2023 - ieeexplore.ieee.org
Molecular Dynamics (MD) simulations are ubiquitous in cutting-edge physio-chemical
research. They provide critical insights into how a physical system evolves over time given a …

Communicating consequences: Visual narratives, abstraction, and polysemy in rural bangladesh

S Sultana, SI Ahmed, JM Rzeszotarski - … of the 2023 CHI Conference on …, 2023 - dl.acm.org
Information communication and visualization practices reflect two centuries of developments
of conventions and best practices which may not be reflective of global audiences' methods …

Visual Analysis of Large‐Scale Protein‐Ligand Interaction Data

K Schatz, JJ Franco‐Moreno, M Schäfer… - Computer Graphics …, 2021 - Wiley Online Library
When studying protein‐ligand interactions, many different factors can influence the
behaviour of the protein as well as the ligands. Molecular visualisation tools typically …