NCBI prokaryotic genome annotation pipeline

T Tatusova, M DiCuccio, A Badretdin… - Nucleic acids …, 2016 - academic.oup.com
Recent technological advances have opened unprecedented opportunities for large-scale
sequencing and analysis of populations of pathogenic species in disease outbreaks, as well …

Mycobacterium tuberculosis metabolism

DF Warner - Cold Spring Harbor perspectives in …, 2015 - perspectivesinmedicine.cshlp.org
Metabolism underpins the physiology and pathogenesis of Mycobacterium tuberculosis.
However, although experimental mycobacteriology has provided key insights into the …

Tolerance and Persistence to Drugs: A Main Challenge in the Fight Against Mycobacterium tuberculosis

F Boldrin, R Provvedi, L Cioetto Mazzabò… - Frontiers in …, 2020 - frontiersin.org
The treatment of tuberculosis is extremely long. One of the reasons why Mycobacterium
tuberculosis elimination from the organism takes so long is that in particular environmental …

RefSeq microbial genomes database: new representation and annotation strategy

T Tatusova, S Ciufo, B Fedorov, K O'Neill… - Nucleic acids …, 2014 - academic.oup.com
The source of the microbial genomic sequences in the RefSeq collection is the set of primary
sequence records submitted to the International Nucleotide Sequence Database public …

Bacillus subtilis, the model Gram‐positive bacterium: 20 years of annotation refinement

R Borriss, A Danchin, CR Harwood… - Microbial …, 2018 - Wiley Online Library
Genome annotation is, nowadays, performed via automatic pipelines that cannot
discriminate between right and wrong annotations. Given their importance in increasing the …

[HTML][HTML] PolyTB: a genomic variation map for Mycobacterium tuberculosis

F Coll, M Preston, JA Guerra-Assunção… - Tuberculosis, 2014 - Elsevier
Tuberculosis (TB) caused by Mycobacterium tuberculosis (Mtb) is the second major cause of
death from an infectious disease worldwide. Recent advances in DNA sequencing are …

[HTML][HTML] Genome wide approaches discover novel Mycobacterium tuberculosis antigens as correlates of infection, disease, immunity and targets for vaccination

M Coppola, THM Ottenhoff - Seminars in immunology, 2018 - Elsevier
Every day approximately six thousand people die of Tuberculosis (TB). Its causative agent,
Mycobacterium tuberculosis (Mtb), is an ancient pathogen that through its evolution …

Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon

AM Stringer, S Currenti, RP Bonocora… - Journal of …, 2014 - journals.asm.org
Escherichia coli AraC is a well-described transcription activator of genes involved in
arabinose metabolism. Using complementary genomic approaches, chromatin …

Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97

KM Malone, D Farrell, TP Stuber… - Genome …, 2017 - journals.asm.org
We report here an update to the reference genome sequence of the bovine tuberculosis
bacillus Mycobacterium bovis AF2122/97, generated using an integrative multiomics …

Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria

GS Knapp, A Lyubetskaya, MW Peterson… - Nucleic Acids …, 2015 - academic.oup.com
Bacterial pathogens adapt to changing environments within their hosts, and the signaling
molecule adenosine 3′, 5′-cyclic monophosphate (cAMP) facilitates this process. In this …