[HTML][HTML] CLIP and complementary methods

M Hafner, M Katsantoni, T Köster, J Marks… - Nature Reviews …, 2021 - nature.com
RNA molecules start assembling into ribonucleoprotein (RNP) complexes during
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …

MicroRNAs (miRNAs) and long non-coding RNAs (lncRNAs) as new tools for cancer therapy: first steps from bench to bedside

M Ratti, A Lampis, M Ghidini, M Salati, MB Mirchev… - Targeted …, 2020 - Springer
Non-coding RNAs represent a significant proportion of the human genome. After having
been considered as 'junk'for a long time, non-coding RNAs are now well established as …

DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts

D Karagkouni, MD Paraskevopoulou… - Nucleic acids …, 2020 - academic.oup.com
Abstract DIANA-LncBase v3. 0 (www. microrna. gr/LncBase) is a reference repository with
experimentally supported miRNA targets on non-coding transcripts. Its third version provides …

DIANA-miRPath v4. 0: expanding target-based miRNA functional analysis in cell-type and tissue contexts

S Tastsoglou, G Skoufos, M Miliotis… - Nucleic Acids …, 2023 - academic.oup.com
DIANA-miRPath is an online miRNA analysis platform harnessing predicted or
experimentally supported miRNA interactions towards the exploration of combined miRNA …

TarBase-v9. 0 extends experimentally supported miRNA–gene interactions to cell-types and virally encoded miRNAs

G Skoufos, P Kakoulidis, S Tastsoglou… - Nucleic Acids …, 2024 - academic.oup.com
TarBase is a reference database dedicated to produce, curate and deliver high quality
experimentally-supported microRNA (miRNA) targets on protein-coding transcripts. In its …

Characterizing miRNA–lncRNA interplay

D Karagkouni, A Karavangeli… - Long Non-Coding RNAs …, 2021 - Springer
Long noncoding RNAs (lncRNAs) are noncoding transcripts, usually longer than 200 nt, that
constitute one of the largest and significantly heterogeneous RNA families. The annotation …

GKLOMLI: a link prediction model for inferring miRNA–lncRNA interactions by using Gaussian kernel-based method on network profile and linear optimization …

L Wong, L Wang, ZH You, CA Yuan, YA Huang… - BMC …, 2023 - Springer
Background The limited knowledge of miRNA–lncRNA interactions is considered as an
obstruction of revealing the regulatory mechanism. Accumulating evidence on Human …

Decoding the non-coding: tools and databases unveiling the hidden world of “junk” RNAs for innovative therapeutic exploration

U Chaudhary, S Banerjee - ACS Pharmacology & Translational …, 2024 - ACS Publications
Non-coding RNAs are pivotal regulators of gene and protein expression, exerting crucial
influences on diverse biological processes. Their dysregulation is frequently implicated in …

An mRNA processing pathway suppresses metastasis by governing translational control from the nucleus

A Navickas, H Asgharian, J Winkler, L Fish… - Nature cell …, 2023 - nature.com
Cancer cells often co-opt post-transcriptional regulatory mechanisms to achieve pathologic
expression of gene networks that drive metastasis. Translational control is a major …

Manipulation of the miR-378a/mt-ATP6 regulatory axis rescues ATP synthase in the diabetic heart and offers a novel role for lncRNA Kcnq1ot1

AJ Durr, QA Hathaway, A Kunovac… - … of Physiology-Cell …, 2022 - journals.physiology.org
Diabetes mellitus has been linked to an increase in mitochondrial microRNA-378a (miR-
378a) content. Enhanced miR-378a content has been associated with a reduction in …