Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

G Li, BW Davis, E Eizirik, WJ Murphy - Genome research, 2016 - genome.cshlp.org
Inter-species hybridization has been recently recognized as potentially common in wild
animals, but the extent to which it shapes modern genomes is still poorly understood …

Ancestral gene flow and parallel organellar genome capture result in extreme phylogenomic discord in a lineage of angiosperms

RA Folk, JR Mandel, JV Freudenstein - Systematic biology, 2017 - academic.oup.com
While hybridization has recently received a resurgence of attention from systematists and
evolutionary biologists, there remains a dearth of case studies on ancient, diversified hybrid …

Power of Bayesian and Heuristic Tests to Detect Cross-Species Introgression with Reference to Gene Flow in the Tamias quadrivittatus Group of North American …

J Ji, DJ Jackson, AD Leaché, Z Yang - Systematic Biology, 2023 - academic.oup.com
In the past two decades, genomic data have been widely used to detect historical gene flow
between species in a variety of plants and animals. The Tamias quadrivittatus group of North …

A multi‐layered approach to the diversification of squirrels

I Menéndez, AR Gomez Cano… - Mammal …, 2021 - Wiley Online Library
The shape of the tree of life is the result of shifting diversification rates, and identifying the
factors driving these shifts is one of the main aims in evolutionary biology. Various biotic and …

[Књига][B] Divergence with genetic exchange

ML Arnold - 2016 - books.google.com
The study of genetic exchange resulting from natural hybridization, horizontal gene transfer,
and viral recombination has long been marked by controversy between researchers holding …

Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change

KE Bi, T Linderoth, S Singhal, D Vanderpool… - PLoS …, 2019 - journals.plos.org
Many species have experienced dramatic changes in their abundance and distribution
during recent climate change, but it is often unclear whether such ecological responses are …

Negligible nuclear introgression despite complete mitochondrial capture between two species of chipmunks

JM Good, D Vanderpool, S Keeble, K Bi - Evolution, 2015 - academic.oup.com
The idea that species boundaries can be semipermeable to gene flow is now widely
accepted but the evolutionary importance of introgressive hybridization remains unclear …

Genomic data reveal a protracted window of introgression during the diversification of a neotropical woodcreeper radiation

P Pulido-Santacruz, A Aleixo, JT Weir - Evolution, 2020 - academic.oup.com
The incidence of introgression during the diversification process and the timespan following
divergence when introgression is possible are poorly understood in the neotropics where …

Revision of widespread red squirrels (genus: Tamiasciurus) highlights the complexity of speciation within North American forests

AG Hope, JL Malaney, KC Bell… - Molecular phylogenetics …, 2016 - Elsevier
Integration of molecular methods, ecological modeling, and statistical hypothesis testing are
increasing our understanding of differentiation within species and phylogenetic relationships …

An evolving view of phylogenetic support

C Simon - Systematic Biology, 2022 - academic.oup.com
If all nucleotide sites evolved at the same rate within molecules and throughout the history of
lineages, if all nucleotides were in equal proportion, if any nucleotide or amino acid evolved …