Water mediation in protein folding and molecular recognition

Y Levy, JN Onuchic - Annu. Rev. Biophys. Biomol. Struct., 2006 - annualreviews.org
Water is essential for life in many ways, and without it biomolecules might no longer truly be
biomolecules. In particular, water is important to the structure, stability, dynamics, and …

Cosolvent effects on protein stability

DR Canchi, AE García - Annual review of physical chemistry, 2013 - annualreviews.org
Proteins are marginally stable, and the folding/unfolding equilibrium of proteins in aqueous
solution can easily be altered by the addition of small organic molecules known as …

Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding

L Hua, R Zhou, D Thirumalai… - Proceedings of the …, 2008 - National Acad Sciences
The mechanism of denaturation of proteins by urea is explored by using all-atom
microseconds molecular dynamics simulations of hen lysozyme generated on BlueGene/L …

Urea's action on hydrophobic interactions

R Zangi, R Zhou, BJ Berne - Journal of the American Chemical …, 2009 - ACS Publications
For more than a century, urea has been commonly used as an agent for denaturing proteins.
However, the mechanism behind its denaturing power is still not well understood. Here we …

Interaction of urea with amino acids: implications for urea-induced protein denaturation

MC Stumpe, H Grubmüller - Journal of the American Chemical …, 2007 - ACS Publications
The molecular mechanism of urea-induced protein denaturation is not yet fully understood.
Mainly two opposing mechanisms are controversially discussed, according to which either …

Monomer adds to preformed structured oligomers of Aβ-peptides by a two-stage dock–lock mechanism

PH Nguyen, MS Li, G Stock… - Proceedings of the …, 2007 - National Acad Sciences
Nonfibrillar soluble oligomers, which are intermediates in the transition from monomers to
amyloid fibrils, may be the toxic species in Alzheimer's disease. To monitor the early events …

Polymorphism in Alzheimer Aβ amyloid organization reflects conformational selection in a rugged energy landscape

Y Miller, B Ma, R Nussinov - Chemical reviews, 2010 - ACS Publications
Amyloids can have normal biological functions. 1r3 However, amyloidogenic proteins can
also form unwanted oligomeric or polymeric aggregates when disturbed from their native …

Toward a molecular theory of early and late events in monomer to amyloid fibril formation

JE Straub, D Thirumalai - Annual review of physical chemistry, 2011 - annualreviews.org
Quantitative understanding of the kinetics of fibril formation and the molecular mechanism of
transition from monomers to fibrils is needed to obtain insights into the growth of amyloid …

Equilibrium study of protein denaturation by urea

DR Canchi, D Paschek, AE García - Journal of the American …, 2010 - ACS Publications
Though urea is commonly used to denature proteins, the molecular mechanism of its
denaturing ability is still a subject of considerable debate. Previous molecular dynamics …

Regulation and aggregation of intrinsically disordered peptides

ZA Levine, L Larini, NE LaPointe… - Proceedings of the …, 2015 - National Acad Sciences
Intrinsically disordered proteins (IDPs) are a unique class of proteins that have no stable
native structure, a feature that allows them to adopt a wide variety of extended and compact …