Computational immunogenomic approaches to predict response to cancer immunotherapies
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The
establishment of large-scale genomic collaborative efforts along with the development of …
establishment of large-scale genomic collaborative efforts along with the development of …
Artificial intelligence applied in neoantigen identification facilitates personalized cancer immunotherapy
Y Cai, R Chen, S Gao, W Li, Y Liu, G Su, M Song… - Frontiers in …, 2023 - frontiersin.org
The field of cancer neoantigen investigation has developed swiftly in the past decade.
Predicting novel and true neoantigens derived from large multi-omics data became difficult …
Predicting novel and true neoantigens derived from large multi-omics data became difficult …
IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing
Y Pan, JW Phillips, BD Zhang… - Proceedings of the …, 2023 - National Acad Sciences
Alternative splicing (AS) is prevalent in cancer, generating an extensive but largely
unexplored repertoire of novel immunotherapy targets. We describe I soform peptides from …
unexplored repertoire of novel immunotherapy targets. We describe I soform peptides from …
Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy
Immunotherapy has emerged as a crucial strategy to combat cancer by “reprogramming” a
patient's own immune system. Although immunotherapy is typically reserved for patients with …
patient's own immune system. Although immunotherapy is typically reserved for patients with …
Comprehensive analysis of neoantigens derived from structural variation across whole genomes from 2528 tumors
Background Neoantigens are critical for anti-tumor immunity and have been long-
envisioned as promising therapeutic targets. However, current neoantigen analyses mostly …
envisioned as promising therapeutic targets. However, current neoantigen analyses mostly …
LENS: landscape of effective neoantigens software
Motivation Elimination of cancer cells by T cells is a critical mechanism of anti-tumor
immunity and cancer immunotherapy response. T cells recognize cancer cells by …
immunity and cancer immunotherapy response. T cells recognize cancer cells by …
[HTML][HTML] Quantifying tumor specificity using Bayesian probabilistic modeling for drug and immunotherapeutic target discovery
In diseases such as cancer, the design of new therapeutic strategies requires extensive,
costly, and unfortunately sometimes deadly testing to reveal life threatening off-target effects …
costly, and unfortunately sometimes deadly testing to reveal life threatening off-target effects …
Characterization of Tumor Antigens from Multi-omics Data: Computational Approaches and Resources
Y Wang, J Wengler, Y Fang, J Zhou… - Genomics …, 2025 - academic.oup.com
Tumor-specific antigens, also known as neoantigens, have potential utility in anti-cancer
immunotherapy, including immune checkpoint blockade (ICB), neoantigen-specific T cell …
immunotherapy, including immune checkpoint blockade (ICB), neoantigen-specific T cell …
Neoantigen identification: Technological advances and challenges
Neoantigens have emerged as promising targets for cutting-edge immunotherapies, such as
cancer vaccines and adoptive cell therapy. These neoantigens are unique to tumors and …
cancer vaccines and adoptive cell therapy. These neoantigens are unique to tumors and …
Advances in CAR T cell therapy: antigen selection, modifications, and current trials for solid tumors
Chimeric antigen receptor (CAR) T cell therapy has revolutionized the treatment of
hematologic malignancies, achieving remarkable clinical success with FDA-approved …
hematologic malignancies, achieving remarkable clinical success with FDA-approved …