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Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery
Computational analysis of RNA sequences constitutes a crucial step in the field of RNA
biology. As in other domains of the life sciences, the incorporation of artificial intelligence …
biology. As in other domains of the life sciences, the incorporation of artificial intelligence …
Fragment-based approaches to identify RNA binders
Although fragment-based drug discovery (FBDD) has been successfully implemented and
well-explored for protein targets, its feasibility for RNA targets is emerging. Despite the …
well-explored for protein targets, its feasibility for RNA targets is emerging. Despite the …
Low-molecular weight small molecules can potently bind RNA and affect oncogenic pathways in cells
RNA is challenging to target with bioactive small molecules, particularly those of low
molecular weight that bind with sufficient affinity and specificity. In this report, we developed …
molecular weight that bind with sufficient affinity and specificity. In this report, we developed …
Fragment‐based drug discovery for RNA targets
KP Lundquist, V Panchal, CH Gotfredsen… - …, 2021 - Wiley Online Library
Rapid development within the fields of both fragment‐based drug discovery (FBDD) and
medicinal targeting of RNA provides possibilities for combining technologies and methods in …
medicinal targeting of RNA provides possibilities for combining technologies and methods in …
Machine learning approaches to optimize small-molecule inhibitors for RNA targeting
H Grimberg, VS Tiwari, B Tam, L Gur-Arie… - Journal of …, 2022 - Springer
In the era of data science, data-driven algorithms have emerged as powerful platforms that
can consolidate bioisosteric rules for preferential modifications on small molecules with a …
can consolidate bioisosteric rules for preferential modifications on small molecules with a …
Ribosome‐targeting antibacterial agents: Advances, challenges, and opportunities
L Zhang, J He, L Bai, S Ruan, T Yang… - Medicinal Research …, 2021 - Wiley Online Library
Ribosomes, which synthesize proteins, are critical organelles for the survival and growth of
bacteria. About 60% of approved antibiotics discovered so far combat pathogenic bacteria …
bacteria. About 60% of approved antibiotics discovered so far combat pathogenic bacteria …
Fragment-sized thiazoles in fragment-based drug discovery campaigns: friend or foe?
Thiazoles exhibit a wide range of biological activities and therefore represent useful and
attractive building blocks. To evaluate their usefulness and pinpoint their liabilities in …
attractive building blocks. To evaluate their usefulness and pinpoint their liabilities in …
[HTML][HTML] Structure-based in silico approaches for drug discovery against Mycobacterium tuberculosis
Mycobacterium tuberculosis is the causative agent of TB and was estimated to cause 1.4
million death in 2019, alongside 10 million new infections. Drug resistance is a growing …
million death in 2019, alongside 10 million new infections. Drug resistance is a growing …
Structure-Informed Design of an Ultra Bright RNA-activated Fluorophore
Fluorogenic RNAs such as the Mango aptamers are uniquely powerful tools for imaging
RNA. A central challenge has been to develop brighter, more specific, and higher affinity …
RNA. A central challenge has been to develop brighter, more specific, and higher affinity …
Fluorescent indicator displacement assay for the discovery of UGGAA repeat-targeted small molecules
T Shibata, Y Matsumoto, A Iihara, K Yamada… - Chemical …, 2023 - pubs.rsc.org
We report that a selective fluorescent indicator NBD-NCD for UGGAA repeats resulted in
fluorescence quenching upon binding to RNA and recovered the fluorescence by displacing …
fluorescence quenching upon binding to RNA and recovered the fluorescence by displacing …