A guide to conquer the biological network era using graph theory
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …
of binary interactions or relations between different bioentities. In this article, we discuss the …
Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context
V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
At the heart of the cellular machinery through the regulation of cellular functions, protein–
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …
Tulip—a huge graph visualization framework
D Auber - Graph drawing software, 2004 - Springer
The research by the information visualization community (" Info Viz") shows clearly that using
a visual representation of data-sets enables faster analysis by the end users. Several …
a visual representation of data-sets enables faster analysis by the end users. Several …
Evaluating effects of background stories on graph perception
A graph is an abstract model that represents relations among entities, for example, the
interactions between characters in a novel. A background story endows entities and …
interactions between characters in a novel. A background story endows entities and …
Topicnets: Visual analysis of large text corpora with topic modeling
We present TopicNets, a Web-based system for visual and interactive analysis of large sets
of documents using statistical topic models. A range of visualization types and control …
of documents using statistical topic models. A range of visualization types and control …
Multiscale visualization of small world networks
Many networks under study in information visualization are" small world" networks. These
networks first appeared in the study of social networks and were shown to be relevant …
networks first appeared in the study of social networks and were shown to be relevant …
Contact area–dependent cell communication and the morphological invariance of ascidian embryogenesis
INTRODUCTION Within each animal species, embryonic development is highly
reproducible, ensuring the faithful production of a complex organism with precisely arranged …
reproducible, ensuring the faithful production of a complex organism with precisely arranged …
Graphia: A platform for the graph-based visualisation and analysis of high dimensional data
Graphia is an open-source platform created for the graph-based analysis of the huge
amounts of quantitative and qualitative data currently being generated from the study of …
amounts of quantitative and qualitative data currently being generated from the study of …
MorphoSeq: full single-cell transcriptome dynamics up to gastrulation in a chordate
Single-cell RNA sequencing (scRNA-seq) provides a leap forward in resolving cellular
diversity and developmental trajectories but fails to comprehensively delineate the spatial …
diversity and developmental trajectories but fails to comprehensively delineate the spatial …
Traffic engineering using segment routing and considering requirements of a carrier IP network
Internet Service Providers are challenged by increasing traffic demands. Advanced Traffic
Engineering (TE) is one way to overcome this challenge. Segment Routing (SR) is a …
Engineering (TE) is one way to overcome this challenge. Segment Routing (SR) is a …