Food components and dietary habits: keys for a healthy gut microbiota composition

E Rinninella, M Cintoni, P Raoul, LR Lopetuso… - Nutrients, 2019 - mdpi.com
The gut microbiota is a changing ecosystem, containing trillions of bacteria, continuously
shaped by many factors, such as dietary habits, seasonality, lifestyle, stress, antibiotics use …

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases

ML Richard, H Sokol - Nature Reviews Gastroenterology & Hepatology, 2019 - nature.com
The gut microbiota is a dense and diverse ecosystem that is involved in many physiological
functions as well as in disease pathogenesis. It is dominated by bacteria, which have been …

The gut mycobiome of the Human Microbiome Project healthy cohort

AK Nash, TA Auchtung, MC Wong, DP Smith, JR Gesell… - Microbiome, 2017 - Springer
Background Most studies describing the human gut microbiome in healthy and diseased
states have emphasized the bacterial component, but the fungal microbiome (ie, the …

Enteric fungal microbiota dysbiosis and ecological alterations in colorectal cancer

OO Coker, G Nakatsu, RZ Dai, WKK Wu, SH Wong… - Gut, 2019 - gut.bmj.com
Objectives Bacteriome and virome alterations are associated with colorectal cancer (CRC).
Nevertheless, the gut fungal microbiota in CRC remains largely unexplored. We aimed to …

New evidences on the altered gut microbiota in autism spectrum disorders

F Strati, D Cavalieri, D Albanese, C De Felice, C Donati… - Microbiome, 2017 - Springer
Abstract Background Autism spectrum disorders (ASDs) are neurodevelopmental conditions
characterized by social and behavioural impairments. In addition to neurological symptoms …

Antibiotics as deep modulators of gut microbiota: between good and evil

G Ianiro, H Tilg, A Gasbarrini - Gut, 2016 - gut.bmj.com
The recent increase in our knowledge of human gut microbiota has changed our view on
antibiotics. Antibiotics are, indeed, no longer considered only beneficial, but also potentially …

Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi

B Wu, M Hussain, W Zhang, M Stadler, X Liu, M **ang - Mycology, 2019 - Taylor & Francis
The global bio-diversity of fungi has been extensively investigated and their species number
has been estimated. Notably, the development of molecular phylogeny has revealed an …

An integrated catalog of reference genes in the human gut microbiome

J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa… - Nature …, 2014 - nature.com
Many analyses of the human gut microbiome depend on a catalog of reference genes.
Existing catalogs for the human gut microbiome are based on samples from single cohorts …

Gut microbiota beyond bacteria—mycobiome, virome, archaeome, and eukaryotic parasites in IBD

M Matijašić, T Meštrović, H Čipčić Paljetak… - International journal of …, 2020 - mdpi.com
The human microbiota is a diverse microbial ecosystem associated with many beneficial
physiological functions as well as numerous disease etiologies. Dominated by bacteria, the …

Fungi in the healthy human gastrointestinal tract

HE Hallen-Adams, MJ Suhr - Virulence, 2017 - Taylor & Francis
Many species of fungi have been detected in the healthy human gut; however, nearly half of
all taxa reported have only been found in one sample or one study. Fungi capable of …