Knowledge-based protein modeling

MS Johnson, N Srinivasan, R Sowdhamini… - Critical reviews in …, 1994 - Taylor & Francis
Abstract Knowledge, both from the three-dimensional structures of homologous proteins and
from the general analysis of protein structure, is of value in modeling a protein of known …

Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

WR Pearson - Genomics, 1991 - Elsevier
The sensitivity and selectivity of the FASTA and the Smith-Waterman protein sequence
comparison algorithms were evaluated using the superfamily classification provided in the …

Similarity of human mitochondrial transcription factor 1 to high mobility group proteins

MA Parisi, DA Clayton - Science, 1991 - science.org
Human mitochondrial transcription factor 1 (mtTF1) has been sequenced and is a nucleus-
encoded DNA binding protein of 204 amino acids (24,400 daltons). Expression of human …

Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli

SP Cohen, H Hächler, SB Levy - Journal of bacteriology, 1993 - journals.asm.org
A 7.8-kbp fragment of chromosomal DNA from a region controlling multiple antibiotic
resistance (Mar) in Escherichia coli has been sequenced. Within the fragment is a potential …

Semidominant Suppressors of Srs2 Helicase Mutations of Saccharomyces cerevisiae Map in the RAD51 Gene, Whose Sequence Predicts a Protein with Similarities …

A Aboussekhra, R Chanet, A Adjiri… - Molecular and cellular …, 1992 - Taylor & Francis
Eleven suppressors of the radiation sensitivity of Saccharomyces cerevisiae diploids lacking
the Srs2 helicase were analyzed and found to contain codominant mutations in the RAD51 …

α, β, γ, and δ T cell antigen receptor genes arose early in vertebrate phylogeny

JP Rast, MK Anderson, SJ Strong, C Luer, RT Litman… - Immunity, 1997 - cell.com
A series of products were amplified using a PCR strategy based on short minimally
degenerate primers and R. eglanteria (clearnose skate) spleen cDNA as template. These …

Sequence and genome organization of Borna disease virus

B Cubitt, C Oldstone, JC De la Torre - Journal of Virology, 1994 - journals.asm.org
We have previously demonstrated that Borna disease virus (BDV) has a negative
nonsegmented single-stranded (NNS) RNA genome that replicates in the nucleus of …

Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene.

M Crespi, E Messens, AB Caplan… - The EMBO …, 1992 - embopress.org
Rhodococcus fascians is a nocardiform bacteria that induces leafy galls (fasciation) on
dicotyledonous and several monocotyledonous plants. The wild‐type strain D188 contained …

[HTML][HTML] Characterization of the human epidermal profilaggrin gene. Genomic organization and identification of an S-100-like calcium binding domain at the amino …

RB Presland, PV Haydock, P Fleckman… - Journal of Biological …, 1992 - Elsevier
Filaggrin is an intermediate filament-associated protein which functions to aggregate keratin
intermediate filaments in the stratum corneum of mammalian epidermis. It is synthesized as …

FLASH: A fast look-up algorithm for string homology

A Califano, I Rigoutsos - Proceedings of IEEE Conference on …, 1993 - ieeexplore.ieee.org
A key issue in managing large amounts of data is the availability of efficient, accurate, ad
selective techniques to detect homology (similarity) between newly recovered and …