Wounding in the plant tissue: the defense of a dangerous passage

DV Savatin, G Gramegna, V Modesti… - Frontiers in plant …, 2014 - frontiersin.org
Plants are continuously exposed to agents such as herbivores and environmental
mechanical stresses that cause wounding and open the way to the invasion by microbial …

Molecular aspects of seed dormancy

R Finkelstein, W Reeves, T Ariizumi… - Annu. Rev. Plant …, 2008 - annualreviews.org
Seed dormancy provides a mechanism for plants to delay germination until conditions are
optimal for survival of the next generation. Dormancy release is regulated by a combination …

XCP1 cleaves Pathogenesis-related protein 1 into CAPE9 for systemic immunity in Arabidopsis

YL Chen, FW Lin, KT Cheng, CH Chang… - Nature …, 2023 - nature.com
Proteolytic activation of cytokines regulates immunity in diverse organisms. In animals,
cysteine-dependent aspartate-specific proteases (caspases) play central roles in cytokine …

ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology

J Waese, J Fan, A Pasha, H Yu, G Fucile, R Shi… - The Plant …, 2017 - academic.oup.com
A big challenge in current systems biology research arises when different types of data must
be accessed from separate sources and visualized using separate tools. The high cognitive …

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

D Warde-Farley, SL Donaldson, O Comes… - Nucleic acids …, 2010 - academic.oup.com
Abstract GeneMANIA (http://www. genemania. org) is a flexible, user-friendly web interface
for generating hypotheses about gene function, analyzing gene lists and prioritizing genes …

An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets

D Winter, B Vinegar, H Nahal, R Ammar, GV Wilson… - PloS one, 2007 - journals.plos.org
Background The exploration of microarray data and data from other high-throughput projects
for hypothesis generation has become a vital aspect of post-genomic research. For the non …

Widespread position-dependent transcriptional regulatory sequences in plants

Y Voichek, G Hristova, A Mollá-Morales, D Weigel… - Nature Genetics, 2024 - nature.com
Much of what we know about eukaryotic transcription stems from animals and yeast;
however, plants evolved separately for over a billion years, leaving ample time for …

How roots and shoots communicate through stressful times

H Li, C Testerink, Y Zhang - Trends in plant science, 2021 - cell.com
When plants face an environmental stress such as water deficit, soil salinity, high
temperature, or shade, good communication between above-and belowground organs is …

Microbial production of natural and non-natural flavonoids: pathway engineering, directed evolution and systems/synthetic biology

RP Pandey, P Parajuli, MAG Koffas, JK Sohng - Biotechnology advances, 2016 - Elsevier
In this review, we address recent advances made in pathway engineering, directed
evolution, and systems/synthetic biology approaches employed in the production and …

EAR motif-mediated transcriptional repression in plants: an underlying mechanism for epigenetic regulation of gene expression

S Kagale, K Rozwadowski - Epigenetics, 2011 - Taylor & Francis
Ethylene-responsive element binding factor-associated Amphiphilic Repression (EAR) motif-
mediated transcriptional repression is emerging as one of the principal mechanisms of plant …