Modelling the molecular mechanisms of aging

MT Mc Auley, AM Guimera, D Hodgson… - Bioscience …, 2017 - portlandpress.com
The aging process is driven at the cellular level by random molecular damage that slowly
accumulates with age. Although cells possess mechanisms to repair or remove damage …

Molecular basis of signaling specificity of insulin and IGF receptors: neglected corners and recent advances

K Siddle - Frontiers in endocrinology, 2012 - frontiersin.org
Insulin and insulin-like growth factor (IGF) receptors utilize common phosphoinositide 3-
kinase/Akt and Ras/extracellular signal-regulated kinase signaling pathways to mediate a …

A dynamic network model of mTOR signaling reveals TSC-independent mTORC2 regulation

P Dalle Pezze, AG Sonntag, A Thien, MT Prentzell… - Science …, 2012 - science.org
The kinase mammalian target of rapamycin (mTOR) exists in two multiprotein complexes
(mTORC1 and mTORC2) and is a central regulator of growth and metabolism. Insulin …

[HTML][HTML] Parameter uncertainty in biochemical models described by ordinary differential equations

J Vanlier, CA Tiemann, PAJ Hilbers… - Mathematical …, 2013 - Elsevier
Improved mechanistic understanding of biochemical networks is one of the driving ambitions
of Systems Biology. Computational modeling allows the integration of various sources of …

Systems biology: model based evaluation and comparison of potential explanations for given biological data

G Cedersund, J Roll - The FEBS journal, 2009 - Wiley Online Library
Systems biology and its usage of mathematical modeling to analyse biological data is
rapidly becoming an established approach to biology. A crucial advantage of this approach …

A methodology for global-sensitivity analysis of time-dependent outputs in systems biology modelling

T Sumner, E Shephard… - Journal of The Royal …, 2012 - royalsocietypublishing.org
One of the main challenges in the development of mathematical and computational models
of biological systems is the precise estimation of parameter values. Understanding the …

[HTML][HTML] Mass and information feedbacks through receptor endocytosis govern insulin signaling as revealed using a parameter-free modeling framework

C Brännmark, R Palmér, ST Glad, G Cedersund… - Journal of Biological …, 2010 - Elsevier
Insulin and other hormones control target cells through a network of signal-mediating
molecules. Such networks are extremely complex due to multiple feedback loops in …

[HTML][HTML] A hierarchical whole-body modeling approach elucidates the link between in vitro insulin signaling and in vivo glucose homeostasis

E Nyman, C Brännmark, R Palmér, J Brugård… - Journal of Biological …, 2011 - Elsevier
Type 2 diabetes is a metabolic disease that profoundly affects energy homeostasis. The
disease involves failure at several levels and subsystems and is characterized by insulin …

Caveolins and caveolae, roles in insulin signalling and diabetes

P Strålfors - Caveolins and Caveolae: Roles in Signaling and …, 2012 - Springer
Much data in the scientific literature demonstrate a fundamental involvement of caveolae in
insulin action, although particular aspects remain matters of debate. The insulin receptor …

Optimal experiment design for model selection in biochemical networks

J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel - BMC systems biology, 2014 - Springer
Background Mathematical modeling is often used to formalize hypotheses on how a
biochemical network operates by discriminating between competing models. Bayesian …