Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening

S Basith, B Manavalan, T Hwan Shin… - Medicinal research …, 2020 - Wiley Online Library
Discovery and development of biopeptides are time‐consuming, laborious, and dependent
on various factors. Data‐driven computational methods, especially machine learning (ML) …

Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

R Akbar, H Bashour, P Rawat, PA Robert, E Smorodina… - MAbs, 2022 - Taylor & Francis
Although the therapeutic efficacy and commercial success of monoclonal antibodies (mAbs)
are tremendous, the design and discovery of new candidates remain a time and cost …

Designing a multi-epitope vaccine against SARS-CoV-2: an immunoinformatics approach

A Samad, F Ahammad, Z Nain, R Alam… - Journal of …, 2022 - Taylor & Francis
Ongoing COVID-19 outbreak has raised a drastic challenge to global public health security.
Most of the patients with COVID-19 suffer from mild flu-like illnesses such as cold and fever; …

Meta-4mCpred: a sequence-based meta-predictor for accurate DNA 4mC site prediction using effective feature representation

B Manavalan, S Basith, TH Shin, L Wei… - Molecular Therapy-Nucleic …, 2019 - cell.com
DNA N4-methylcytosine (4mC) is an important genetic modification and plays crucial roles in
differentiation between self and non-self DNA and in controlling DNA replication, cell cycle …

StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides

P Charoenkwan, W Chiangjong… - Briefings in …, 2021 - academic.oup.com
The release of interleukin (IL)-6 is stimulated by antigenic peptides from pathogens as well
as by immune cells for activating aggressive inflammation. IL-6 inducing peptides are …

iUmami-SCM: a novel sequence-based predictor for prediction and analysis of umami peptides using a scoring card method with propensity scores of dipeptides

P Charoenkwan, J Yana, C Nantasenamat… - Journal of Chemical …, 2020 - ACS Publications
Umami or the taste of monosodium glutamate represents one of the major attractive taste
modalities in humans. Therefore, knowledge about biophysical and biochemical properties …

Designing of a multi-epitope vaccine against the structural proteins of marburg virus exploiting the immunoinformatics approach

SA Sami, KKS Marma, S Mahmud, MAN Khan… - ACS …, 2021 - ACS Publications
Marburg virus disease (MVD) caused by the Marburg virus (MARV) generally appears with
flu-like symptoms and leads to severe hemorrhagic fever. It spreads via direct contact with …

SDM6A: a web-based integrative machine-learning framework for predicting 6mA sites in the rice genome

S Basith, B Manavalan, TH Shin, G Lee - Molecular Therapy-Nucleic Acids, 2019 - cell.com
DNA N 6-adenine methylation (6mA) is an epigenetic modification in prokaryotes and
eukaryotes. Identifying 6mA sites in rice genome is important in rice epigenetics and …

mACPpred: a support vector machine-based meta-predictor for identification of anticancer peptides

V Boopathi, S Subramaniyam, A Malik, G Lee… - International journal of …, 2019 - mdpi.com
Anticancer peptides (ACPs) are promising therapeutic agents for targeting and killing cancer
cells. The accurate prediction of ACPs from given peptide sequences remains as an open …

Design powerful predictor for mRNA subcellular location prediction in Homo sapiens

ZY Zhang, YH Yang, H Ding, D Wang… - Briefings in …, 2021 - academic.oup.com
Messenger RNAs (mRNAs) shoulder special responsibilities that transmit genetic code from
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …