SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19

A Grifoni, J Sidney, R Vita, B Peters, S Crotty… - Cell host & …, 2021 - cell.com
Over the past year, numerous studies in the peer reviewed and preprint literature have
reported on the virological, epidemiological and clinical characteristics of the coronavirus …

The evolving landscape of biomarkers for checkpoint inhibitor immunotherapy

JJ Havel, D Chowell, TA Chan - Nature Reviews Cancer, 2019 - nature.com
Checkpoint inhibitor-based immunotherapies that target cytotoxic T lymphocyte antigen 4
(CTLA4) or the programmed cell death 1 (PD1) pathway have achieved impressive success …

Spatiotemporal immune landscape of colorectal cancer liver metastasis at single-cell level

Y Wu, S Yang, J Ma, Z Chen, G Song, D Rao… - Cancer …, 2022 - aacrjournals.org
Liver metastasis, the leading cause of colorectal cancer mortality, exhibits a highly
heterogeneous and suppressive immune microenvironment. Here, we sequenced 97 …

[HTML][HTML] Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals

A Grifoni, D Weiskopf, SI Ramirez, J Mateus, JM Dan… - Cell, 2020 - cell.com
Understanding adaptive immunity to SARS-CoV-2 is important for vaccine development,
interpreting coronavirus disease 2019 (COVID-19) pathogenesis, and calibration of …

[HTML][HTML] A sequence homology and bioinformatic approach can predict candidate targets for immune responses to SARS-CoV-2

A Grifoni, J Sidney, Y Zhang, RH Scheuermann… - Cell host & …, 2020 - cell.com
Effective countermeasures against the recent emergence and rapid expansion of the 2019
novel coronavirus (SARS-CoV-2) require the development of data and tools to understand …

Pan-tumor genomic biomarkers for PD-1 checkpoint blockade–based immunotherapy

R Cristescu, R Mogg, M Ayers, A Albright, E Murphy… - Science, 2018 - science.org
INTRODUCTION Immunotherapy targeting the programmed cell death protein–1 (PD-1) axis
elicits durable antitumor responses in multiple cancer types. However, clinical responses …

COVID-19 in patients with lung cancer

J Luo, H Rizvi, IR Preeshagul, JV Egger, D Hoyos… - Annals of …, 2020 - Elsevier
Background Patients with lung cancers may have disproportionately severe coronavirus
disease 2019 (COVID-19) outcomes. Understanding the patient-specific and cancer-specific …

Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy

D Chowell, LGT Morris, CM Grigg, JK Weber… - Science, 2018 - science.org
CD8+ T cell–dependent killing of cancer cells requires efficient presentation of tumor
antigens by human leukocyte antigen class I (HLA-I) molecules. However, the extent to …

A spatial architecture-embedding HLA signature to predict clinical response to immunotherapy in renal cell carcinoma

L Kinget, S Naulaerts, J Govaerts, I Vanmeerbeek… - Nature Medicine, 2024 - nature.com
An important challenge in the real-world management of patients with advanced clear-cell
renal cell carcinoma (aRCC) is determining who might benefit from immune checkpoint …

Genomic correlates of response to immune checkpoint blockade

TE Keenan, KP Burke, EM Van Allen - Nature medicine, 2019 - nature.com
Despite impressive durable responses, immune checkpoint inhibitors do not provide a long-
term benefit to the majority of patients with cancer. Understanding genomic correlates of …