Protist metabarcoding and environmental biomonitoring: time for change

J Pawlowski, F Lejzerowicz… - European Journal of …, 2016 - Elsevier
High-throughput amplicon sequencing of environmental DNA and/or RNA proved to be a
powerful tool to describe protist diversity. This new approach called also the metabarcoding …

[PDF][PDF] Seven reasons why protists make useful bioindicators

RJ Payne - Acta Protozoologica, 2013 - bibliotekanauki.pl
To introduce the special issue this paper reviews the use of protists as bioindicators. Seven
key advantages of protist bioindicators are highlighted, namely: environmental sensitivity …

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

J Schönfeld, E Alve, E Geslin, F Jorissen… - Marine …, 2012 - Elsevier
The European Community Marine Strategy Framework Directive (MSFD) was established to
provide guidelines for monitoring the quality of marine ecosystems. Monitoring the status of …

Testate amoebae analysis in ecological and paleoecological studies of wetlands: past, present and future

EAD Mitchell, DJ Charman, BG Warner - Biodiversity and conservation, 2008 - Springer
Testate amoebae are an abundant and diverse polyphyletic group of shelled protozoa living
in aquatic to moist habitats ranging from estuaries to lakes, rivers, wetlands, soils, litter, and …

Develo** Foram-AMBI for biomonitoring in the Mediterranean: Species assignments to ecological categories

F Jorissen, MP Nardelli, A Almogi-Labin… - Marine …, 2018 - Elsevier
Most environmental bio-monitoring methods using the species composition of marine faunas
define the Ecological Quality Status of soft bottom ecosystems based on the relative …

[PDF][PDF] Molecular and morphological taxonomy of living Ammonia and related taxa (Foraminifera) and their biogeography.

BW Hayward, M Holzmann, J Pawlowski… - …, 2021 - researchgate.net
Globally, one of the two most common shallow-marine and estuarine foraminiferal genera is
Ammonia. Over the past 50 years, the majority of workers have identified specimens in this …

Classification of volcanic ash particles using a convolutional neural network and probability

D Shoji, R Noguchi, S Otsuki, H Hino - Scientific reports, 2018 - nature.com
Analyses of volcanic ash are typically performed either by qualitatively classifying ash
particles by eye or by quantitatively parameterizing its shape and texture. While complex …

Marine connections of Amazonia: Evidence from foraminifera and dinoflagellate cysts (early to middle Miocene, Colombia/Peru)

M Boonstra, MIF Ramos, EI Lammertsma… - Palaeogeography …, 2015 - Elsevier
Species composition in the present-day Amazonian heartland has an imprint of past marine
influence. The exact nature, timing and extent of this marine influence, however, are largely …

Combining marine macroecology and palaeoecology in understanding biodiversity: microfossils as a model

M Yasuhara, DP Tittensor, H Hillebrand… - Biological …, 2017 - Wiley Online Library
There is growing interest in the integration of macroecology and palaeoecology towards a
better understanding of past, present, and anticipated future biodiversity dynamics …

Indicative value of benthic foraminifera for biomonitoring: Assignment to ecological groups of sensitivity to total organic carbon of species from European intertidal …

VMP Bouchet, F Frontalini, F Francescangeli… - Marine Pollution …, 2021 - Elsevier
This work contributes to the ongoing work aiming at confirming benthic foraminifera as a
biological quality element. In this study, benthic foraminifera from intertidal and transitional …