The advantages and limitations of trait analysis with GWAS: a review

A Korte, A Farlow - Plant methods, 2013 - Springer
Over the last 10 years, high-density SNP arrays and DNA re-sequencing have illuminated
the majority of the genotypic space for a number of organisms, including humans, maize …

Natural variations and genome-wide association studies in crop plants

X Huang, B Han - Annual review of plant biology, 2014 - annualreviews.org
Natural variants of crops are generated from wild progenitor plants under both natural and
human selection. Diverse crops that are able to adapt to various environmental conditions …

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

K Yano, E Yamamoto, K Aya, H Takeuchi, P Lo, L Hu… - Nature …, 2016 - nature.com
A genome-wide association study (GWAS) can be a powerful tool for the identification of
genes associated with agronomic traits in crop species, but it is often hindered by population …

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

V Segura, BJ Vilhjálmsson, A Platt, A Korte, Ü Seren… - Nature …, 2012 - nature.com
Population structure causes genome-wide linkage disequilibrium between unlinked loci,
leading to statistical confounding in genome-wide association studies. Mixed models have …

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

H Li, Z Peng, X Yang, W Wang, J Fu, J Wang, Y Han… - Nature …, 2013 - nature.com
Maize kernel oil is a valuable source of nutrition. Here we extensively examine the genetic
architecture of maize oil biosynthesis in a genome-wide association study using 1.03 million …

Features and applications of haplotypes in crop breeding

JA Bhat, D Yu, A Bohra, SA Ganie… - Communications …, 2021 - nature.com
Climate change with altered pest-disease dynamics and rising abiotic stresses threatens
resource-constrained agricultural production systems worldwide. Genomics-assisted …

Genome-wide association studies in plants: the missing heritability is in the field

B Brachi, GP Morris, JO Borevitz - Genome biology, 2011 - Springer
Genome-wide association studies in plants: the missing heritability is in the field | Genome
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us …

On the immortality of television sets:“function” in the human genome according to the evolution-free gospel of ENCODE

D Graur, Y Zheng, N Price, RBR Azevedo… - Genome biology and …, 2013 - academic.oup.com
A recent slew of ENCyclopedia Of DNA Elements (ENCODE) Consortium publications,
specifically the article signed by all Consortium members, put forward the idea that more …

Interpreting population-and family-based genome-wide association studies in the presence of confounding

C Veller, GM Coop - PLoS Biology, 2024 - journals.plos.org
A central aim of genome-wide association studies (GWASs) is to estimate direct genetic
effects: the causal effects on an individual's phenotype of the alleles that they carry …

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

A Korte, BJ Vilhjálmsson, V Segura, A Platt, Q Long… - Nature …, 2012 - nature.com
Genome-wide association studies (GWAS) are a standard approach for studying the
genetics of natural variation. A major concern in GWAS is the need to account for the …