A general and efficient representation of ancestral recombination graphs

Y Wong, A Ignatieva, J Koskela, G Gorjanc… - Genetics, 2024 - academic.oup.com
As a result of recombination, adjacent nucleotides can have different paths of genetic
inheritance and therefore the genealogical trees for a sample of DNA sequences vary along …

[HTML][HTML] Bacterial genomic G+ C composition-eliciting environmental adaptation

S Mann, YPP Chen - Genomics, 2010 - Elsevier
Bacterial genomes reflect their adaptation strategies through nucleotide usage trends found
in their chromosome composition. Bacteria, unlike eukaryotes contain a wide range of …

[BOG][B] Fundamentals of parameterized complexity

RG Downey, MR Fellows - 2013 - Springer
Parameterized complexity/multivariate complexity algorithmics is an exciting field of modern
algorithm design and analysis, with a broad range of theoretical and practical aspects that …

[BOG][B] Phylogeny: discrete and random processes in evolution

M Steel - 2016 - SIAM
The idea that all life on earth traces back to a common origin dates back at least to Charles
Darwin's Origin of Species. Ever since, biologists have tried to piece together parts of this …

Inferring horizontal gene transfer

M Ravenhall, N Škunca, F Lassalle… - PLoS computational …, 2015 - journals.plos.org
Horizontal or Lateral Gene Transfer (HGT or LGT) is the transmission of portions of genomic
DNA between organisms through a process decoupled from vertical inheritance. In the …

[BOG][B] Handbook of memetic algorithms

F Neri, C Cotta, P Moscato - 2011 - books.google.com
Memetic Algorithms (MAs) are computational intelligence structures combining multiple and
various operators in order to address optimization problems. The combination and …

[BOG][B] Algorithms and theory of computation handbook, volume 2: special topics and techniques

MJ Atallah, M Blanton - 2009 - books.google.com
This handbook provides an up-to-date compendium of fundamental computer science
topics, techniques, and applications. Along with updating and revising many of the existing …

Highways of gene sharing in prokaryotes

RG Beiko, TJ Harlow… - Proceedings of the …, 2005 - National Acad Sciences
The extent to which lateral genetic transfer has shaped microbial genomes has major
implications for the emergence of community structures. We have performed a rigorous …

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

L Liu, DK Pearl - Systematic biology, 2007 - academic.oup.com
The desire to infer the evolutionary history of a group of species should be more viable now
that a considerable amount of multilocus molecular data is available. However, the current …

Horizontal gene transfer accelerates genome innovation and evolution

R Jain, MC Rivera, JE Moore… - Molecular biology and …, 2003 - academic.oup.com
Horizontal gene transfer (HGT) spreads genetic diversity by moving genes across species
boundaries. By rapidly introducing newly evolved genes into existing genomes, HGT …