Eukaryotic core promoters and the functional basis of transcription initiation

V Haberle, A Stark - Nature reviews Molecular cell biology, 2018 - nature.com
Abstract RNA polymerase II (Pol II) core promoters are specialized DNA sequences at
transcription start sites of protein-coding and non-coding genes that support the assembly of …

Defining functional DNA elements in the human genome

M Kellis, B Wold, MP Snyder, BE Bernstein… - Proceedings of the …, 2014 - pnas.org
With the completion of the human genome sequence, attention turned to identifying and
annotating its functional DNA elements. As a complement to genetic and comparative …

The connectome of an insect brain

M Winding, BD Pedigo, CL Barnes, HG Patsolic, Y Park… - Science, 2023 - science.org
Brains contain networks of interconnected neurons and so knowing the network architecture
is essential for understanding brain function. We therefore mapped the synaptic-resolution …

FlyBase: a guided tour of highlighted features

LS Gramates, J Agapite, H Attrill, BR Calvi… - Genetics, 2022 - academic.oup.com
FlyBase provides a centralized resource for the genetic and genomic data of Drosophila
melanogaster. As FlyBase enters our fourth decade of service to the research community …

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples

D Hörl, F Rojas Rusak, F Preusser, P Tillberg… - Nature …, 2019 - nature.com
Light-sheet imaging of cleared and expanded samples creates terabyte-sized datasets that
consist of many unaligned three-dimensional image tiles, which must be reconstructed …

Independent optical excitation of distinct neural populations

NC Klapoetke, Y Murata, SS Kim, SR Pulver… - Nature …, 2014 - nature.com
Optogenetic tools enable examination of how specific cell types contribute to brain circuit
functions. A long-standing question is whether it is possible to independently activate two …

The neuronal architecture of the mushroom body provides a logic for associative learning

Y Aso, D Hattori, Y Yu, RM Johnston, NA Iyer, TTB Ngo… - elife, 2014 - elifesciences.org
We identified the neurons comprising the Drosophila mushroom body (MB), an associative
center in invertebrate brains, and provide a comprehensive map describing their potential …

Dopamine promotes head direction plasticity during orienting movements

YE Fisher, M Marquis, I D'Alessandro, RI Wilson - Nature, 2022 - nature.com
In neural networks that store information in their connection weights, there is a tradeoff
between sensitivity and stability,. Connections must be plastic to incorporate new …

BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

L Manubens-Gil, Z Zhou, H Chen, A Ramanathan… - Nature …, 2023 - nature.com
BigNeuron is an open community bench-testing platform with the goal of setting open
standards for accurate and fast automatic neuron tracing. We gathered a diverse set of …

Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system

A Nern, BD Pfeiffer, GM Rubin - Proceedings of the National Academy of …, 2015 - pnas.org
We describe the development and application of methods for high-throughput
neuroanatomy in Drosophila using light microscopy. These tools enable efficient multicolor …