A short survey on protein blocks

AP Joseph, G Agarwal, S Mahajan, JC Gelly… - Biophysical …, 2010 - Springer
Protein structures are classically described in terms of secondary structures. However, even
if the regular secondary structures have relevant physical meaning, their recognition based …

Protein flexibility in the light of structural alphabets

P Craveur, AP Joseph, J Esque, TJ Narwani… - Frontiers in molecular …, 2015 - frontiersin.org
Protein structures are valuable tools to understand protein function. Nonetheless, proteins
are often considered as rigid macromolecules while their structures exhibit specific flexibility …

[KİTAP][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information

V Suresh, L Liu, D Adjeroh, X Zhou - Nucleic acids research, 2015 - academic.oup.com
RNA-protein complexes are essential in mediating important fundamental cellular
processes, such as transport and localization. In particular, ncRNA-protein interactions play …

[HTML][HTML] Extension of the classical classification of β-turns

AG de Brevern - Scientific reports, 2016 - nature.com
The functional properties of a protein primarily depend on its three-dimensional (3D)
structure. These properties have classically been assigned, visualized and analysed on the …

Predicting protein flexibility through the prediction of local structures

A Bornot, C Etchebest… - … : Structure, Function, and …, 2011 - Wiley Online Library
Protein structures are valuable tools for understanding protein function. However, protein
dynamics is also considered a key element in protein function. Therefore, in addition to …

Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural …

E Faraggi, B Xue, Y Zhou - Proteins: Structure, Function, and …, 2009 - Wiley Online Library
This article attempts to increase the prediction accuracy of residue solvent accessibility and
real‐value backbone torsion angles of proteins through improved learning. Most methods …

PredyFlexy: flexibility and local structure prediction from sequence

AG de Brevern, A Bornot, P Craveur… - Nucleic acids …, 2012 - academic.oup.com
Protein structures are necessary for understanding protein function at a molecular level.
Dynamics and flexibility of protein structures are also key elements of protein function. So …

Assignment of PolyProline II conformation and analysis of sequence–structure relationship

Y Mansiaux, AP Joseph, JC Gelly, AG de Brevern - PloS one, 2011 - journals.plos.org
Background Secondary structures are elements of great importance in structural biology,
biochemistry and bioinformatics. They are broadly composed of two repetitive structures …

A Perspective on the (Rise and Fall of) Protein β-Turns

AG de Brevern - International Journal of Molecular Sciences, 2022 - mdpi.com
The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-
turns were described more than 50 years ago and account for more than 20% of protein …