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A short survey on protein blocks
Protein structures are classically described in terms of secondary structures. However, even
if the regular secondary structures have relevant physical meaning, their recognition based …
if the regular secondary structures have relevant physical meaning, their recognition based …
Protein flexibility in the light of structural alphabets
Protein structures are valuable tools to understand protein function. Nonetheless, proteins
are often considered as rigid macromolecules while their structures exhibit specific flexibility …
are often considered as rigid macromolecules while their structures exhibit specific flexibility …
[KİTAP][B] Introduction to proteins: structure, function, and motion
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information
RNA-protein complexes are essential in mediating important fundamental cellular
processes, such as transport and localization. In particular, ncRNA-protein interactions play …
processes, such as transport and localization. In particular, ncRNA-protein interactions play …
[HTML][HTML] Extension of the classical classification of β-turns
AG de Brevern - Scientific reports, 2016 - nature.com
The functional properties of a protein primarily depend on its three-dimensional (3D)
structure. These properties have classically been assigned, visualized and analysed on the …
structure. These properties have classically been assigned, visualized and analysed on the …
Predicting protein flexibility through the prediction of local structures
Protein structures are valuable tools for understanding protein function. However, protein
dynamics is also considered a key element in protein function. Therefore, in addition to …
dynamics is also considered a key element in protein function. Therefore, in addition to …
Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural …
This article attempts to increase the prediction accuracy of residue solvent accessibility and
real‐value backbone torsion angles of proteins through improved learning. Most methods …
real‐value backbone torsion angles of proteins through improved learning. Most methods …
PredyFlexy: flexibility and local structure prediction from sequence
Protein structures are necessary for understanding protein function at a molecular level.
Dynamics and flexibility of protein structures are also key elements of protein function. So …
Dynamics and flexibility of protein structures are also key elements of protein function. So …
Assignment of PolyProline II conformation and analysis of sequence–structure relationship
Background Secondary structures are elements of great importance in structural biology,
biochemistry and bioinformatics. They are broadly composed of two repetitive structures …
biochemistry and bioinformatics. They are broadly composed of two repetitive structures …
A Perspective on the (Rise and Fall of) Protein β-Turns
AG de Brevern - International Journal of Molecular Sciences, 2022 - mdpi.com
The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-
turns were described more than 50 years ago and account for more than 20% of protein …
turns were described more than 50 years ago and account for more than 20% of protein …