Immunoglobulin germline gene variation and its impact on human disease
Immunoglobulins (Ig) play an important role in the immune system both when expressed as
antigen receptors on the cell surface of B cells and as antibodies secreted into extracellular …
antigen receptors on the cell surface of B cells and as antibodies secreted into extracellular …
[HTML][HTML] Mining adaptive immune receptor repertoires for biological and clinical information using machine learning
The adaptive immune system stores invaluable information about current and past immune
responses and may serve as an ultrasensitive biosensor. Given the immune system's critical …
responses and may serve as an ultrasensitive biosensor. Given the immune system's critical …
Machine learning for precision diagnostics of autoimmunity
J Kruta, R Carapito, M Trendelenburg, T Martin… - Scientific Reports, 2024 - nature.com
Early and accurate diagnosis is crucial to prevent disease development and define
therapeutic strategies. Due to predominantly unspecific symptoms, diagnosis of autoimmune …
therapeutic strategies. Due to predominantly unspecific symptoms, diagnosis of autoimmune …
Benchmarking antibody clustering methods using sequence, structural, and machine learning similarity measures for antibody discovery applications
D Chomicz, J Kończak, S Wróbel, T Satława… - Frontiers in Molecular …, 2024 - frontiersin.org
Antibodies are proteins produced by our immune system that have been harnessed as
biotherapeutics. The discovery of antibody-based therapeutics relies on analyzing large …
biotherapeutics. The discovery of antibody-based therapeutics relies on analyzing large …
Human antibody recognition and neutralization mode on the NTD and RBD domains of SARS-CoV-2 spike protein
R Otsubo, T Minamitani, K Kobiyama, J Fujita, T Ito… - Scientific Reports, 2022 - nature.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes coronavirus
disease 2019 (COVID-19). Variants of concern (VOCs) such as Delta and Omicron have …
disease 2019 (COVID-19). Variants of concern (VOCs) such as Delta and Omicron have …
Machine learning approaches to TCR repertoire analysis
Y Katayama, R Yokota, T Akiyama… - Frontiers in …, 2022 - frontiersin.org
Sparked by the development of genome sequencing technology, the quantity and quality of
data handled in immunological research have been changing dramatically. Various data …
data handled in immunological research have been changing dramatically. Various data …
Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions
Germline variations in immunoglobulin genes influence the repertoire of B cell receptors and
antibodies, and such polymorphisms may impact disease susceptibility. However, the …
antibodies, and such polymorphisms may impact disease susceptibility. However, the …
A computational method for immune repertoire mining that identifies novel binders from different clonotypes, demonstrated by identifying anti-pertussis toxoid …
Due to their shared genetic history, antibodies from the same clonotype often bind to the
same epitope. This knowledge is used in immune repertoire mining, where known binders …
same epitope. This knowledge is used in immune repertoire mining, where known binders …
RIOT—Rapid Immunoglobulin Overview Tool—annotation of nucleotide and amino acid immunoglobulin sequences using an open germline database
P Dudzic, B Janusz, T Satława… - Briefings in …, 2025 - academic.oup.com
Antibodies are a cornerstone of the immune system, playing a pivotal role in identifying and
neutralizing infections caused by bacteria, viruses, and other pathogens. Understanding …
neutralizing infections caused by bacteria, viruses, and other pathogens. Understanding …
The multilevel extensive diversity across the cynomolgus macaque captured by ultra-deep adaptive immune receptor repertoire sequencing
Y Zhu, H Tang, W **e, S Chen, H Zeng, C Lan… - Science …, 2024 - science.org
The extent to which AIRRs differ among and within individuals remains elusive. Via ultra-
deep repertoire sequencing of 22 and 25 tissues in three cynomolgus macaques …
deep repertoire sequencing of 22 and 25 tissues in three cynomolgus macaques …