Immunoglobulin germline gene variation and its impact on human disease

I Mikocziova, V Greiff, LM Sollid - Genes & Immunity, 2021 - nature.com
Immunoglobulins (Ig) play an important role in the immune system both when expressed as
antigen receptors on the cell surface of B cells and as antibodies secreted into extracellular …

[HTML][HTML] Mining adaptive immune receptor repertoires for biological and clinical information using machine learning

V Greiff, G Yaari, LG Cowell - Current Opinion in Systems Biology, 2020 - Elsevier
The adaptive immune system stores invaluable information about current and past immune
responses and may serve as an ultrasensitive biosensor. Given the immune system's critical …

Machine learning for precision diagnostics of autoimmunity

J Kruta, R Carapito, M Trendelenburg, T Martin… - Scientific Reports, 2024 - nature.com
Early and accurate diagnosis is crucial to prevent disease development and define
therapeutic strategies. Due to predominantly unspecific symptoms, diagnosis of autoimmune …

Benchmarking antibody clustering methods using sequence, structural, and machine learning similarity measures for antibody discovery applications

D Chomicz, J Kończak, S Wróbel, T Satława… - Frontiers in Molecular …, 2024 - frontiersin.org
Antibodies are proteins produced by our immune system that have been harnessed as
biotherapeutics. The discovery of antibody-based therapeutics relies on analyzing large …

Human antibody recognition and neutralization mode on the NTD and RBD domains of SARS-CoV-2 spike protein

R Otsubo, T Minamitani, K Kobiyama, J Fujita, T Ito… - Scientific Reports, 2022 - nature.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes coronavirus
disease 2019 (COVID-19). Variants of concern (VOCs) such as Delta and Omicron have …

Machine learning approaches to TCR repertoire analysis

Y Katayama, R Yokota, T Akiyama… - Frontiers in …, 2022 - frontiersin.org
Sparked by the development of genome sequencing technology, the quantity and quality of
data handled in immunological research have been changing dramatically. Various data …

Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions

I Mikocziova, M Gidoni, I Lindeman… - Nucleic Acids …, 2020 - academic.oup.com
Germline variations in immunoglobulin genes influence the repertoire of B cell receptors and
antibodies, and such polymorphisms may impact disease susceptibility. However, the …

A computational method for immune repertoire mining that identifies novel binders from different clonotypes, demonstrated by identifying anti-pertussis toxoid …

E Richardson, JD Galson, P Kellam, DF Kelly, SE Smith… - MAbs, 2021 - Taylor & Francis
Due to their shared genetic history, antibodies from the same clonotype often bind to the
same epitope. This knowledge is used in immune repertoire mining, where known binders …

RIOT—Rapid Immunoglobulin Overview Tool—annotation of nucleotide and amino acid immunoglobulin sequences using an open germline database

P Dudzic, B Janusz, T Satława… - Briefings in …, 2025 - academic.oup.com
Antibodies are a cornerstone of the immune system, playing a pivotal role in identifying and
neutralizing infections caused by bacteria, viruses, and other pathogens. Understanding …

The multilevel extensive diversity across the cynomolgus macaque captured by ultra-deep adaptive immune receptor repertoire sequencing

Y Zhu, H Tang, W **e, S Chen, H Zeng, C Lan… - Science …, 2024 - science.org
The extent to which AIRRs differ among and within individuals remains elusive. Via ultra-
deep repertoire sequencing of 22 and 25 tissues in three cynomolgus macaques …