Fragmentation pathways of protonated peptides

B Paizs, S Suhai - Mass spectrometry reviews, 2005 - Wiley Online Library
The fragmentation pathways of protonated peptides are reviewed in the present paper
paying special attention to classification of the known fragmentation channels into a simple …

Mobile and localized protons: a framework for understanding peptide dissociation

VH Wysocki, G Tsaprailis, LL Smith… - Journal of Mass …, 2000 - Wiley Online Library
Protein identification and peptide sequencing by tandem mass spectrometry requires
knowledge of how peptides fragment in the gas phase, specifically which bonds are broken …

Collision‐induced dissociation (CID) of peptides and proteins

JM Wells, SA McLuckey - Methods in enzymology, 2005 - Elsevier
The most commonly used activation method in the tandem mass spectrometry (MS) of
peptides and proteins is energetic collisions with a neutral target gas. The overall process of …

Cryogenic ion chemistry and spectroscopy

AB Wolk, CM Leavitt, E Garand… - Accounts of Chemical …, 2014 - ACS Publications
The use of mass spectrometry in macromolecular analysis is an incredibly important
technique and has allowed efficient identification of secondary and tertiary protein …

Reactions of polypeptide ions with electrons in the gas phase

RA Zubarev - Mass spectrometry reviews, 2003 - Wiley Online Library
Abstract I. Introduction 58 A. Challenges in the Gas‐Phase Fragmentation of Polypeptides
58 B. Ion–Electron Interactions 58 C. Nomenclature 59 II. Instrumental Realization and …

Performance characteristics of electron transfer dissociation mass spectrometry

DM Good, M Wirtala, GC McAlister… - Molecular & Cellular …, 2007 - mcponline.org
We performed a large scale study of electron transfer dissociation (ETD) performance, as
compared with ion trap collision-activated dissociation (CAD), for peptides ranging from∼ …

Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors

DL Swaney, GC McAlister, M Wirtala… - Analytical …, 2007 - ACS Publications
Electron-transfer dissociation (ETD) delivers the unique attributes of electron capture
dissociation to mass spectrometers that utilize radio frequency trap**-type devices (eg …

Tandem mass spectrometry: dissociation of ions by collisional activation

AK Shukla, JH Futrell - Journal of mass spectrometry, 2000 - Wiley Online Library
This review presents a brief historical introduction to the development of tandem mass
spectrometry and its principal applications. It is placed in the context of the general …

Proteomics of integral membrane proteins theory and application

AE Speers, CC Wu - Chemical reviews, 2007 - ACS Publications
Integral membrane proteins (IMPs) lie at the critical junctions between intracellular
compartments and cells and their environment. As such, IMPs are in a unique position to …

Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra

LA Breci, DL Tabb, JR Yates, VH Wysocki - Analytical chemistry, 2003 - ACS Publications
Fragmentation at the Xxx-Pro bond was analyzed for a group of peptide mass spectra that
were acquired in a Finnigan ion trap mass spectrometer and were generated from proteins …