New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays

JB Baell, GA Holloway - Journal of medicinal chemistry, 2010 - ACS Publications
This report describes a number of substructural features which can help to identify
compounds that appear as frequent hitters (promiscuous compounds) in many biochemical …

Pharmacophore based drug design approach as a practical process in drug discovery

Q Gao, L Yang, Y Zhu - Current computer-aided drug design, 2010 - ingentaconnect.com
This review summarizes the background and updated progress of pharmacophore based
drug design and provides the fundamental approach strategies on both structure based and …

Self-organizing maps in drug discovery: compound library design, scaffold-hop**, repurposing

P Schneider, Y Tanrikulu… - Current medicinal …, 2009 - ingentaconnect.com
High-throughput screening campaigns are fuelled not only by corporate or “maximally
diverse” compound collections, but increasingly accompanied by target-or bioactivity …

[HTML][HTML] Chemically advanced template search (CATS) for scaffold-hop** and prospective target prediction for 'orphan'molecules

M Reutlinger, CP Koch, D Reker, N Todoroff… - Molecular …, 2013 - ncbi.nlm.nih.gov
Drug discovery is driven by the identification of new chemical entities (NCEs).[1, 2] Virtual
screening and de novo design techniques have been proven to serve this purpose, thereby …

Voyages to the (un) known: adaptive design of bioactive compounds

G Schneider, M Hartenfeller, M Reutlinger… - Trends in …, 2009 - cell.com
De novo drug design has emerged as a valuable concept for the rapid identification of lead
structure candidates. In particular, fragment-based molecular assembly methods have been …

Recent trends and observations in the design of high-quality screening collections

S Renner, M Popov, A Schuffenhauer… - Future medicinal …, 2011 - Taylor & Francis
The design of a high-quality screening collection is of utmost importance for the early drug-
discovery process and provides, in combination with high-quality assay systems, the …

Deorphaning pyrrolopyrazines as potent multi‐target antimalarial agents

D Reker, M Seet, M Pillong, CP Koch… - Angewandte Chemie …, 2014 - Wiley Online Library
The discovery of pyrrolopyrazines as potent antimalarial agents is presented, with the most
effective compounds exhibiting EC50 values in the low nanomolar range against asexual …

Homology model-based virtual screening for GPCR ligands using docking and target-biased scoring

T Weil, S Renner - Journal of chemical information and modeling, 2008 - ACS Publications
The current study investigates the combination of two recently reported techniques for the
improvement of homology model-based virtual screening for G-protein coupled receptor …

Maximum common binding modes (MCBM): consensus docking scoring using multiple ligand information and interaction fingerprints

S Renner, S Derksen, S Radestock… - Journal of chemical …, 2008 - ACS Publications
Improving the scoring functions for small molecule-protein docking is a highly challenging
task in current computational drug design. Here we present a novel consensus scoring …

Development of a new de novo design algorithm for exploring chemical space

K Mishima, H Kaneko, K Funatsu - Molecular Informatics, 2014 - Wiley Online Library
In the first stage of development of new drugs, various lead compounds with high activity are
required. To design such compounds, we focus on chemical space defined by structural …