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[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
De novo assembly of transcriptomes and differential gene expression analysis using short-read data from emerging model organisms–a brief guide
Many questions in biology benefit greatly from the use of a variety of model systems. High-
throughput sequencing methods have been a triumph in the democratization of diverse …
throughput sequencing methods have been a triumph in the democratization of diverse …
Modern venomics—Current insights, novel methods, and future perspectives in biological and applied animal venom research
Venoms have evolved> 100 times in all major animal groups, and their components, known
as toxins, have been fine-tuned over millions of years into highly effective biochemical …
as toxins, have been fine-tuned over millions of years into highly effective biochemical …
Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions
The Symbiodiniaceae are a taxonomically and functionally diverse family of marine
dinoflagellates. Their symbiotic relationship with invertebrates such as scleractinian corals …
dinoflagellates. Their symbiotic relationship with invertebrates such as scleractinian corals …
[PDF][PDF] The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity
Background Venoms are deadly weapons to subdue prey or deter predators that have
evolved independently in many animal lineages. The genomes of venomous animals are …
evolved independently in many animal lineages. The genomes of venomous animals are …
The genome of the reef-building glass sponge Aphrocallistes vastus provides insights into silica biomineralization
Well-annotated and contiguous genomes are an indispensable resource for understanding
the evolution, development, and metabolic capacities of organisms. Sponges, an …
the evolution, development, and metabolic capacities of organisms. Sponges, an …
A Phylogenomic Backbone for Acoelomorpha Inferred From Transcriptomic Data
Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many
structures typical of other bilaterians. Xenacoelomorphs—which include three main groups …
structures typical of other bilaterians. Xenacoelomorphs—which include three main groups …
Transcriptomic analysis across crayfish (Cherax quadricarinatus) claw regeneration reveals potential stem cell sources for cultivated crustacean meat
L Musgrove, A Bhojwani, C Hyde… - International …, 2024 - pmc.ncbi.nlm.nih.gov
In the face of rising global demand and unsustainable production methods, cultivated
crustacean meat (CCM) is proposed as an alternative means to produce delicious lobster …
crustacean meat (CCM) is proposed as an alternative means to produce delicious lobster …
A novel target‐enriched multilocus assay for sponges (Porifera): Red Sea Haplosclerida (Demospongiae) as a test case
With declining biodiversity worldwide, a better understanding of species diversity and their
relationships is imperative for conservation and management efforts. Marine sponges are …
relationships is imperative for conservation and management efforts. Marine sponges are …
Alphaflexivirus genomes in stony coral tissue loss disease-affected, disease-exposed, and disease-unexposed coral colonies in the US Virgin Islands
Stony coral tissue loss disease (SCTLD) is decimating Caribbean corals. Here, through the
metatranscriptomic assembly and annotation of two alphaflexivirus-like strains, we provide …
metatranscriptomic assembly and annotation of two alphaflexivirus-like strains, we provide …